Factsheet for GSMUA_Achr10P16510_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
mitochondrion 1
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, secretory
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400003947	Potato	cytosol	48.09	60.11
PGSC0003DMT400003942	Potato	cytosol	48.09	60.11
GSMUA_Achr2P20910_001	Banana	plastid	67.66	36.47
Zm00001d053960_P003	Maize	plastid	77.45	36.04
TraesCS2B01G181900.1	Wheat	plastid	76.6	35.93
EES06213	Sorghum	plastid	77.45	35.9
KRH17398	Soybean	nucleus	76.17	35.8
Zm00001d015088_P002	Maize	plastid	76.17	35.45
TraesCS6B01G108100.2	Wheat	plastid	76.17	35.38
TraesCS6D01G074300.1	Wheat	plastid	76.17	35.1
TraesCS6A01G080600.1	Wheat	plastid	75.74	34.9
VIT_05s0049g01980.t01	Wine grape	plastid	74.89	34.65
VIT_08s0056g01640.t01	Wine grape	plastid	75.74	34.56
Os02t0125100-01	Rice	plastid	75.32	34.44
PGSC0003DMT400035003	Potato	cytosol, plastid	74.47	34.38
Solyc03g005730.2.1	Tomato	plastid	74.47	34.38
HORVU6Hr1G013950.5	Barley	plastid	76.17	33.65
KRG92248	Soybean	plastid	71.91	33.47
Solyc09g090900.2.1	Tomato	plastid	71.91	33.47
Bra040341.1-P	Field mustard	plastid	71.06	33.13
CDY56070	Canola	plastid	71.06	33.07
CDY43713	Canola	plastid	70.64	32.94
CDY01130	Canola	plastid	70.21	32.48
AT4G13430.1	Thale cress	plastid	70.21	32.42
CDY47367	Canola	plastid	70.21	32.42
Bra032708.1-P	Field mustard	plastid	70.21	32.35
Zm00001d053941_P001	Maize	cytosol	40.43	26.84
KRH05916	Soybean	plastid	76.6	18.77
Zm00001d053950_P001	Maize	cytosol	8.94	8.94
GSMUA_Achr5P00710_001	Banana	plastid	26.81	6.34
GSMUA_Achr11P...	Banana	plastid	26.38	6.29
GSMUA_Achr11P...	Banana	plastid	26.38	6.19
GSMUA_Achr9P30280_001	Banana	plastid	26.38	6.18
CDX87247	Canola	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:GSMUA_Achr10P16510_001	EnsemblPlants:GSMUA_Achr10T16510_001	EnsemblPlantsGene:GSMUA_Achr10G16510_001	Gene3D:3.30.499.10	Gene3D:3.30.499.20	GO:GO:0008150
GO:GO:0008152	InterPro:Acnase/IPM_dHydase_lsu_aba_1/3	InterPro:Acoase/IPM_deHydtase_lsu_aba	InterPro:Aconitase_4Fe-4S_dom	InterPro:IPR015931	KEGG:00290+4.2.1.33
PANTHER:PTHR43822	PFAM:PF00330	SUPFAM:SSF53732	UniParc:UPI000296BAB8	UniProt:M0RIS6	MapMan:4.1.3.2.5.2.1
MapMan:9.5.1.3.1	:	:	:	:	:

Description

3-isopropylmalate dehydratase [Source:GMGC_GENE;Acc:GSMUA_Achr10G16510_001]

Coordinates

chr10:-:24009140..24012834

Molecular Weight (calculated)

25557.9 Da

IEP (calculated)

7.979

GRAVY (calculated)

-0.075

Length

235 amino acids

Sequence
(BLAST)

001: MPNYLLAKDL ILQIIGEITV AGAKSMEFVG STVKGLSAST MMTLCNMVIE AGGKNGVVSA DEPTFKCLDD KTSKNFEPLH SRSNYLFIQE YKIDVSKLEP
101: LVAKPHSPDS RALARECKGI KIDRAYIGSC TGGKMEDFLA AAKVFLASVR VPTFLVPATQ KVQIGACMYQ SGRKTCSQIF EEAGCEVPCL FVSTTNRNFH
201: GRMGHKEGQM YLASPYTAAA SALTGYDTDP RDFLP

Best Arabidopsis Sequence Match ( AT4G13430.1 )
(BLAST)

001: MASVISSSPF LCKSSSKSDL GISSFPKSSQ ISIHRCQKKS ISRKIVSVMA PQKDRSPGTT GSVKTGMTMT EKILARASEK SLVVPGDNIW VNVDVLMTHD
101: VCGPGAFGIF KREFGEKAKV WDPEKIVVIP DHYIFTADKR ANRNVDIMRE HCREQNIKYF YDITDLGNFK ANPDYKGVCH VALAQEGHCR PGEVLLGTDS
201: HTCTAGAFGQ FATGIGNTDA GFVLGTGKIL LKVPPTMRFI LDGEMPSYLQ AKDLILQIIG EISVAGATYK TMEFSGTTIE SLSMEERMTL CNMVVEAGGK
301: NGVIPPDATT LNYVENRTSV PFEPVYSDGN ASFVADYRFD VSKLEPVVAK PHSPDNRALA RECKDVKIDR VYIGSCTGGK TEDFMAAAKL FHAAGRKVKV
401: PTFLVPATQK VWMDVYALPV PGAGGKTCAQ IFEEAGCDTP ASPSCGACLG GPADTYARLN EPQVCVSTTN RNFPGRMGHK EGQIYLASPY TAAASALTGR
501: VADPREFLQ

Arabidopsis Description

IIL13-isopropylmalate dehydratase large subunit, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q94AR8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.