Factsheet for TraesCS6D01G074300.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

plastid: 16595579
plastid: 18419817

msms PMID: 18419817 doi

FM Dupont

Western Regional Research Center, United States Department of Agriculture, Agricultural Research Service, 800 Buchanan Street, Albany, CA 94710K, USA.

msms PMID: 16595579 doi

Y Balmer, WH Vensel, FM DuPont, BB Buchanan, WJ Hurkman

Department of Plant and Microbial Biology, University of California, 111 Koshland Hall, Berkeley, CA 94720, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G080600.1	Wheat	plastid	99.8	99.8
TraesCS6B01G108100.2	Wheat	plastid	98.04	98.81
HORVU6Hr1G013950.5	Barley	plastid	96.47	92.48
Zm00001d015088_P002	Maize	plastid	91.37	92.28
EES06213	Sorghum	plastid	91.37	91.91
Os02t0125100-01	Rice	plastid	92.16	91.44
Zm00001d053960_P003	Maize	plastid	88.63	89.5
GSMUA_Achr2P20910_001	Banana	plastid	72.55	84.86
KRH17398	Soybean	nucleus	80.98	82.6
PGSC0003DMT400003942	Potato	cytosol	30.2	81.91
PGSC0003DMT400003947	Potato	cytosol	30.2	81.91
PGSC0003DMT400035003	Potato	cytosol, plastid	80.59	80.75
Solyc03g005730.2.1	Tomato	plastid	80.59	80.75
VIT_05s0049g01980.t01	Wine grape	plastid	80.2	80.51
VIT_08s0056g01640.t01	Wine grape	plastid	81.18	80.39
Bra040341.1-P	Field mustard	plastid	76.08	76.98
CDY56070	Canola	plastid	76.08	76.83
CDY43713	Canola	plastid	75.88	76.79
Solyc09g090900.2.1	Tomato	plastid	75.49	76.24
CDY01130	Canola	plastid	75.88	76.18
GSMUA_Achr10P...	Banana	cytosol	35.1	76.17
AT4G13430.1	Thale cress	plastid	75.69	75.83
Bra032708.1-P	Field mustard	plastid	75.69	75.69
CDY47367	Canola	plastid	75.49	75.64
KRG92248	Soybean	plastid	73.33	74.06
Zm00001d053941_P001	Maize	cytosol	51.18	73.73
CDX87247	Canola	cytosol	16.27	58.45
Zm00001d053950_P001	Maize	cytosol	25.49	55.32
KRH05916	Soybean	plastid	81.18	43.17
TraesCS7D01G223000.1	Wheat	cytosol	20.78	14.29
TraesCS6D01G384200.1	Wheat	plastid	22.75	11.9
TraesCS3D01G188200.1	Wheat	plastid	21.37	10.86

Protein Annotations

KEGG:00290+4.2.1.33	Gene3D:3.30.499.10	Gene3D:3.30.499.20	MapMan:4.1.3.2.5.2.1	MapMan:9.5.1.3.1	InterPro:Acnase/IPM_dHydase_lsu_aba_1/3
InterPro:Acoase/IPM_deHydtase_lsu_aba	InterPro:Aconitase_4Fe-4S_dom	GO:GO:0003674	GO:GO:0003824	GO:GO:0003861	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152
GO:GO:0008652	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009987
GO:GO:0016836	GO:GO:0019748	GO:GO:0019761	GO:GO:0046686	GO:GO:0050486	GO:GO:0051539
InterPro:Homoacnase/IPMdehydase_lsu	InterPro:IPMI_cat	InterPro:IPR015931	PFAM:PF00330	PRINTS:PR00415	PANTHER:PTHR43822
SUPFAM:SSF53732	TIGRFAMs:TIGR01343	EnsemblPlantsGene:TraesCS6D01G074300	EnsemblPlants:TraesCS6D01G074300.1	TIGR:cd01583	SEG:seg

Description

No Description!

Coordinates

chr6D:+:37921000..37926071

Molecular Weight (calculated)

55132.6 Da

IEP (calculated)

6.901

GRAVY (calculated)

-0.227

Length

510 amino acids

Sequence
(BLAST)

001: MASISAAAKA TSAAFAHKKE LAAAAPQQQR LSAGASSRRA RAGRVRAVAT PTRAPRSPAS TGSVKSPMTT TEKILARASE RASLEPGENV WVDVDVLMTH
101: DVCGPGTIGI FKQEFGEDAK VWDREKVVII PDHYIFTSDE RANRNVDILR DFCEEQKIKY FYDIKDLSDF RANPDYKGVC HIALAQEGHC RPGEVLLGTD
201: SHTCNAGAFG QFATGIGNTD AGFVMGTGKA LLKVPPTIRF VLDGEMPPYL LAKDLILQII GEISVSGATY RSMEFVGSTI ESLTMEERMT LCNMVIEAGG
301: KNGVVPADET TFKYLEGKTS VEYEPVYSDA QARFYSDYRF DVSKLEPVVA KPHSPDNRAL ARECKDVKID RVYIGSCTGG KTEDFIAAAK VFLASGKKVK
401: VPTFLVPATQ KVWMDVYSLP VPGSGGKTCS QIFEEAGCDT PASPNCGACL GGPRDTYARM NEPTVCVSTT NRNFPGRMGH KEGQIYLASP FTAAASALTG
501: YVTDPRDFLS

Best Arabidopsis Sequence Match ( AT4G13430.1 )
(BLAST)

001: MASVISSSPF LCKSSSKSDL GISSFPKSSQ ISIHRCQKKS ISRKIVSVMA PQKDRSPGTT GSVKTGMTMT EKILARASEK SLVVPGDNIW VNVDVLMTHD
101: VCGPGAFGIF KREFGEKAKV WDPEKIVVIP DHYIFTADKR ANRNVDIMRE HCREQNIKYF YDITDLGNFK ANPDYKGVCH VALAQEGHCR PGEVLLGTDS
201: HTCTAGAFGQ FATGIGNTDA GFVLGTGKIL LKVPPTMRFI LDGEMPSYLQ AKDLILQIIG EISVAGATYK TMEFSGTTIE SLSMEERMTL CNMVVEAGGK
301: NGVIPPDATT LNYVENRTSV PFEPVYSDGN ASFVADYRFD VSKLEPVVAK PHSPDNRALA RECKDVKIDR VYIGSCTGGK TEDFMAAAKL FHAAGRKVKV
401: PTFLVPATQK VWMDVYALPV PGAGGKTCAQ IFEEAGCDTP ASPSCGACLG GPADTYARLN EPQVCVSTTN RNFPGRMGHK EGQIYLASPY TAAASALTGR
501: VADPREFLQ

Arabidopsis Description

IIL13-isopropylmalate dehydratase large subunit, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q94AR8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.