CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
nucleus 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d015088_P002	Maize	plastid	96.25	96.63
Zm00001d053960_P003	Maize	plastid	93.29	93.66
Os02t0125100-01	Rice	plastid	92.7	91.44
TraesCS6D01G074300.1	Wheat	plastid	91.91	91.37
TraesCS6B01G108100.2	Wheat	plastid	91.12	91.3
TraesCS6A01G080600.1	Wheat	plastid	91.72	91.18
TraesCS2B01G181900.1	Wheat	plastid	87.57	88.62
HORVU6Hr1G013950.5	Barley	plastid	90.73	86.47
KRH17398	Soybean	nucleus	84.02	85.2
GSMUA_Achr2P20910_001	Banana	plastid	73.18	85.09
VIT_08s0056g01640.t01	Wine grape	plastid	84.81	83.5
PGSC0003DMT400003947	Potato	cytosol	30.77	82.98
PGSC0003DMT400003942	Potato	cytosol	30.77	82.98
Solyc03g005730.2.1	Tomato	plastid	83.23	82.91
VIT_05s0049g01980.t01	Wine grape	plastid	83.04	82.87
PGSC0003DMT400035003	Potato	cytosol, plastid	83.04	82.71
CDY56070	Canola	plastid	77.71	78.02
Bra040341.1-P	Field mustard	plastid	77.51	77.98
Solyc09g090900.2.1	Tomato	plastid	77.51	77.82
CDY43713	Canola	plastid	77.32	77.78
GSMUA_Achr10P...	Banana	cytosol	35.9	77.45
CDY01130	Canola	plastid	77.51	77.36
Bra032708.1-P	Field mustard	plastid	77.51	77.06
CDY47367	Canola	plastid	77.32	77.01
AT4G13430.1	Thale cress	plastid	77.32	77.01
KRG92248	Soybean	plastid	75.15	75.45
CDX87247	Canola	cytosol	16.96	60.56
KRH05916	Soybean	plastid	84.22	44.53
EES10322	Sorghum	cytosol	22.09	12.39
EES14669	Sorghum	plastid	22.88	11.65
EER97286	Sorghum	mitochondrion	22.09	11.44
EER92899	Sorghum	plastid	21.1	10.8

Protein Annotations

KEGG:00290+4.2.1.33	Gene3D:3.30.499.10	Gene3D:3.30.499.20	MapMan:4.1.3.2.5.2.1	EntrezGene:8055065	MapMan:9.5.1.3.1
InterPro:Acnase/IPM_dHydase_lsu_aba_1/3	InterPro:Acoase/IPM_deHydtase_lsu_aba	InterPro:Aconitase_4Fe-4S_dom	UniProt:C5XT62	EnsemblPlants:EES06213	ProteinID:EES06213
ProteinID:EES06213.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0003861	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0008652
GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009987	GO:GO:0016836
GO:GO:0019748	GO:GO:0019761	GO:GO:0046686	GO:GO:0050486	GO:GO:0051539	InterPro:Homoacnase/IPMdehydase_lsu
InterPro:IPMI_cat	InterPro:IPR015931	PFAM:PF00330	PRINTS:PR00415	PANTHER:PTHR43822	EnsemblPlantsGene:SORBI_3004G023900
SUPFAM:SSF53732	unigene:Sbi.7213	TIGRFAMs:TIGR01343	UniParc:UPI0001890C17	RefSeq:XP_002453237.1	SEG:seg

Description

hypothetical protein

Coordinates

chr4:-:1942652..1947111

Molecular Weight (calculated)

54773.4 Da

IEP (calculated)

7.377

GRAVY (calculated)

-0.189

Length

507 amino acids

Sequence
(BLAST)

001: MASSISAAAK ASTAFAHKKE LAAPAPAQHR AGSSRRTKPC RVRAVASPAR APRAPSSTGS VKSAMTMTEK ILARASERAA LEPGENVWVD VDVLMTHDVC
101: GPGTIGIFKK EFGEDAKVWD REKVVIIPDH YIFTTDERAN RNVDILRDFC LEQNIKYFYD IKDLSNFKAN PDYKGVCHVA LAQEGHCRPG EVLLGTDSHT
201: CNAGAFGQFA TGIGNTDAGF VLGTGKALLK VPPTIRFVLD GEMPPYLLAK DLILQIIGEI SVSGATYKSM EFVGSTVESL TMEERMTLCN MVIEAGGKNG
301: VVPADETTFK YLEGKTSVDY EPVYSDAQAR FFSDYRFDVS KLEPVVAKPH SPDNRALARE CKDVKVDRVY IGSCTGGKTE DFLAAAKVFL ASGKKVKVPT
401: FLVPATQKVW MDVYSLPVPG SGGKTCSQIF EEAGCDTPAS PSCGACLGGP RDTYARMNEP MVCVSTTNRN FPGRMGHKEG QIYLASPYTA AASALTGYVT
501: DPRDFLM

Best Arabidopsis Sequence Match ( AT4G13430.1 )
(BLAST)

001: MASVISSSPF LCKSSSKSDL GISSFPKSSQ ISIHRCQKKS ISRKIVSVMA PQKDRSPGTT GSVKTGMTMT EKILARASEK SLVVPGDNIW VNVDVLMTHD
101: VCGPGAFGIF KREFGEKAKV WDPEKIVVIP DHYIFTADKR ANRNVDIMRE HCREQNIKYF YDITDLGNFK ANPDYKGVCH VALAQEGHCR PGEVLLGTDS
201: HTCTAGAFGQ FATGIGNTDA GFVLGTGKIL LKVPPTMRFI LDGEMPSYLQ AKDLILQIIG EISVAGATYK TMEFSGTTIE SLSMEERMTL CNMVVEAGGK
301: NGVIPPDATT LNYVENRTSV PFEPVYSDGN ASFVADYRFD VSKLEPVVAK PHSPDNRALA RECKDVKIDR VYIGSCTGGK TEDFMAAAKL FHAAGRKVKV
401: PTFLVPATQK VWMDVYALPV PGAGGKTCAQ IFEEAGCDTP ASPSCGACLG GPADTYARLN EPQVCVSTTN RNFPGRMGHK EGQIYLASPY TAAASALTGR
501: VADPREFLQ

Arabidopsis Description

IIL13-isopropylmalate dehydratase large subunit, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q94AR8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.