Factsheet for VIT_08s0056g01640.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_05s0049g01980.t01	Wine grape	plastid	91.84	93.11
PGSC0003DMT400035003	Potato	cytosol, plastid	88.74	89.78
Solyc03g005730.2.1	Tomato	plastid	88.54	89.59
GSMUA_Achr2P20910_001	Banana	plastid	72.82	86.01
EES06213	Sorghum	plastid	83.5	84.81
PGSC0003DMT400003947	Potato	cytosol	30.87	84.57
PGSC0003DMT400003942	Potato	cytosol	30.87	84.57
Zm00001d015088_P002	Maize	plastid	81.94	83.56
CDY56070	Canola	plastid	80.78	82.38
Bra040341.1-P	Field mustard	plastid	80.58	82.34
CDY43713	Canola	plastid	80.39	82.14
CDY01130	Canola	plastid	80.78	81.89
Zm00001d053960_P003	Maize	plastid	80.19	81.78
AT4G13430.1	Thale cress	plastid	80.78	81.73
Bra032708.1-P	Field mustard	plastid	80.78	81.57
CDY47367	Canola	plastid	80.58	81.53
TraesCS6B01G108100.2	Wheat	plastid	80.0	81.42
TraesCS6D01G074300.1	Wheat	plastid	80.39	81.18
TraesCS6A01G080600.1	Wheat	plastid	80.39	81.18
Os02t0125100-01	Rice	plastid	80.97	81.13
TraesCS2B01G181900.1	Wheat	plastid	78.45	80.64
Solyc09g090900.2.1	Tomato	plastid	78.64	80.2
KRG92248	Soybean	plastid	77.28	78.81
HORVU6Hr1G013950.5	Barley	plastid	80.0	77.44
GSMUA_Achr10P...	Banana	cytosol	34.56	75.74
Zm00001d053941_P001	Maize	cytosol	49.13	71.47
CDX87247	Canola	cytosol	16.89	61.27
Zm00001d053950_P001	Maize	cytosol	25.44	55.74
VIT_00s0264g00030.t01	Wine grape	mitochondrion	21.36	11.98
VIT_12s0059g02150.t01	Wine grape	plastid	21.55	11.25
VIT_19s0090g00460.t01	Wine grape	plastid	21.55	11.0

Protein Annotations

KEGG:00290+4.2.1.33	EntrezGene:100251885	wikigene:100251885	Gene3D:3.30.499.10	Gene3D:3.30.499.20	MapMan:4.1.3.2.5.2.1
MapMan:9.5.1.3.1	InterPro:Acnase/IPM_dHydase_lsu_aba_1/3	InterPro:Acoase/IPM_deHydtase_lsu_aba	InterPro:Aconitase_4Fe-4S_dom	ProteinID:CCB56025	ProteinID:CCB56025.1
UniProt:F6HMP3	EMBL:FN595995	GO:GO:0003674	GO:GO:0003824	GO:GO:0003861	GO:GO:0005488
GO:GO:0008150	GO:GO:0008152	GO:GO:0008652	GO:GO:0009058	GO:GO:0009987	GO:GO:0016836
GO:GO:0051539	InterPro:Homoacnase/IPMdehydase_lsu	InterPro:IPMI_cat	InterPro:IPR015931	EntrezGene:LOC100251885	wikigene:LOC100251885
PFAM:PF00330	PANTHER:PTHR43822	SUPFAM:SSF53732	TIGRFAMs:TIGR01343	UniParc:UPI0002108823	ArrayExpress:VIT_08s0056g01640
EnsemblPlantsGene:VIT_08s0056g01640	EnsemblPlants:VIT_08s0056g01640.t01	RefSeq:XP_002271046	RefSeq:XP_002271046.1	SEG:seg	:

Description

No Description!

Coordinates

chr8:+:2609945..2636120

Molecular Weight (calculated)

56130.1 Da

IEP (calculated)

7.590

GRAVY (calculated)

-0.235

Length

515 amino acids

Sequence
(BLAST)

001: MASSTISSNS TTFIKKDVGL SAFSSSPSSF SVPKTKRRNS RKIVSVMAPQ QSPRSPSTTG SVKTAMTMTE KILARASQKP QLSPGENVWV DVDILMTHDV
101: CGPGSFGIFK KEFGQNAKVW DREKIVIIPD HYIFTNDERA NRNVDILRDF CTEQNIKYFY DIKDLGNFKV NPDYKGVCHV ALAQEGHCRP GEVLLGTDSH
201: TCTAGAFGQF ATGIGNTDAG FVLGTGKILL KVPPTLRFVM DGEMPDYLLA KDLILQIIGE ISVSGATYKS MEFVGSTVES LTMEERMTLC NMVVEAGGKN
301: GVVPADSTTH KYLEDKTDVP YEPVYSDEQA RFLSEYRFDV SKLEPLVAKP HSPDNRALAR ECKDVKIDRV YIGSCTGGKT EDFLAAAKVF HASGKKVKVP
401: TFLVPATQKV WMDVYSLPVP GCGGKTCSQI FEEAGCDTPA SPSCGACLGG PRDTYARMNE PQANVIVKLV CVSTTNRNFP GRMGHKEGQI YLASPYTAAA
501: SALTGFVTDP REFLQ

Best Arabidopsis Sequence Match ( AT4G13430.1 )
(BLAST)

001: MASVISSSPF LCKSSSKSDL GISSFPKSSQ ISIHRCQKKS ISRKIVSVMA PQKDRSPGTT GSVKTGMTMT EKILARASEK SLVVPGDNIW VNVDVLMTHD
101: VCGPGAFGIF KREFGEKAKV WDPEKIVVIP DHYIFTADKR ANRNVDIMRE HCREQNIKYF YDITDLGNFK ANPDYKGVCH VALAQEGHCR PGEVLLGTDS
201: HTCTAGAFGQ FATGIGNTDA GFVLGTGKIL LKVPPTMRFI LDGEMPSYLQ AKDLILQIIG EISVAGATYK TMEFSGTTIE SLSMEERMTL CNMVVEAGGK
301: NGVIPPDATT LNYVENRTSV PFEPVYSDGN ASFVADYRFD VSKLEPVVAK PHSPDNRALA RECKDVKIDR VYIGSCTGGK TEDFMAAAKL FHAAGRKVKV
401: PTFLVPATQK VWMDVYALPV PGAGGKTCAQ IFEEAGCDTP ASPSCGACLG GPADTYARLN EPQVCVSTTN RNFPGRMGHK EGQIYLASPY TAAASALTGR
501: VADPREFLQ

Arabidopsis Description

IIL13-isopropylmalate dehydratase large subunit, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q94AR8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.