Factsheet for Zm00001d053950_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d053941_P001	Maize	cytosol	88.94	59.04
CDX87247	Canola	cytosol	27.66	45.77
GSMUA_Achr2P20910_001	Banana	plastid	53.19	28.67
Zm00001d053960_P003	Maize	plastid	58.72	27.33
Zm00001d015088_P002	Maize	plastid	56.6	26.34
TraesCS6B01G108100.2	Wheat	plastid	55.32	25.69
TraesCS6D01G074300.1	Wheat	plastid	55.32	25.49
TraesCS6A01G080600.1	Wheat	plastid	55.32	25.49
Os02t0125100-01	Rice	plastid	55.74	25.49
VIT_08s0056g01640.t01	Wine grape	plastid	55.74	25.44
KRH17398	Soybean	nucleus	54.04	25.4
TraesCS2B01G181900.1	Wheat	plastid	54.04	25.35
VIT_05s0049g01980.t01	Wine grape	plastid	54.47	25.2
PGSC0003DMT400035003	Potato	cytosol, plastid	54.47	25.15
Solyc03g005730.2.1	Tomato	plastid	54.47	25.15
HORVU6Hr1G013950.5	Barley	plastid	54.89	24.25
CDY01130	Canola	plastid	50.64	23.43
Bra040341.1-P	Field mustard	plastid	50.21	23.41
CDY43713	Canola	plastid	50.21	23.41
KRG92248	Soybean	plastid	50.21	23.37
CDY56070	Canola	plastid	50.21	23.37
CDY47367	Canola	plastid	50.21	23.18
Solyc09g090900.2.1	Tomato	plastid	49.79	23.17
Bra032708.1-P	Field mustard	plastid	50.21	23.14
AT4G13430.1	Thale cress	plastid	49.79	22.99
KRH05916	Soybean	plastid	54.47	13.35
GSMUA_Achr10P...	Banana	cytosol	8.94	8.94
Zm00001d024952_P005	Maize	cytosol	15.74	4.15
Zm00001d049409_P001	Maize	plasma membrane	16.17	3.85
Zm00001d035277_P001	Maize	cytosol, mitochondrion, plastid	8.51	3.81
Zm00001d048358_P002	Maize	plastid	15.74	3.74
Zm00001d006476_P004	Maize	mitochondrion	15.74	3.71
Zm00001d027558_P003	Maize	plastid	15.74	3.61
Zm00001d004564_P004	Maize	plastid	15.32	3.59
Zm00001d020428_P001	Maize	cytosol	2.13	1.86
Zm00001d032214_P001	Maize	mitochondrion, plastid	1.7	1.12
PGSC0003DMT400003947	Potato	cytosol	0.43	0.53
PGSC0003DMT400003942	Potato	cytosol	0.43	0.53
Zm00001d015497_P001	Maize	cytosol	0.43	0.36
Zm00001d040769_P001	Maize	mitochondrion	0.43	0.36

Protein Annotations

EnsemblPlants:Zm00001d053950_P001	EnsemblPlants:Zm00001d053950_T001	EnsemblPlantsGene:Zm00001d053950	Gene3D:3.30.499.20	GO:GO:0008150	GO:GO:0008152
InterPro:Acoase/IPM_deHydtase_lsu_aba	InterPro:Aconitase_4Fe-4S_dom	KEGG:00290+4.2.1.33	PANTHER:PTHR43822	PFAM:PF00330	PRINTS:PR00415
ProteinID:AQK60838.1	SEG:seg	SUPFAM:SSF53732	UniParc:UPI00084499A9	UniProt:A0A1D6QTU8	MapMan:35.1

Description

3-isopropylmalate dehydratase large subunit

Coordinates

chr4:-:244137920..244138865

Molecular Weight (calculated)

26426.5 Da

IEP (calculated)

5.890

GRAVY (calculated)

-0.060

Length

235 amino acids

Sequence
(BLAST)

001: MDEIHVLSGT DATQEGDGSL VVGGAAIVVV GRHVARRDVL AADGWMDMID DEQLWVDGGG VVRACVKVFG ERCFWFWLFI RPRGDDRSAL IHSLDIFKKE
101: FGARVWDREK LVVIPDHYIF TSDDRANRNV DILRDFCAEQ NVKYFYDIKD LRQRFRSYKG VCHCRPGEVL LGTDSHTCNA GAFGQFATGI GNTDAYKLCY
201: ICSFLRIYHI IGEISVSGAT YKSMEFVGST VESLT

Best Arabidopsis Sequence Match ( AT4G13430.1 )
(BLAST)

001: MASVISSSPF LCKSSSKSDL GISSFPKSSQ ISIHRCQKKS ISRKIVSVMA PQKDRSPGTT GSVKTGMTMT EKILARASEK SLVVPGDNIW VNVDVLMTHD
101: VCGPGAFGIF KREFGEKAKV WDPEKIVVIP DHYIFTADKR ANRNVDIMRE HCREQNIKYF YDITDLGNFK ANPDYKGVCH VALAQEGHCR PGEVLLGTDS
201: HTCTAGAFGQ FATGIGNTDA GFVLGTGKIL LKVPPTMRFI LDGEMPSYLQ AKDLILQIIG EISVAGATYK TMEFSGTTIE SLSMEERMTL CNMVVEAGGK
301: NGVIPPDATT LNYVENRTSV PFEPVYSDGN ASFVADYRFD VSKLEPVVAK PHSPDNRALA RECKDVKIDR VYIGSCTGGK TEDFMAAAKL FHAAGRKVKV
401: PTFLVPATQK VWMDVYALPV PGAGGKTCAQ IFEEAGCDTP ASPSCGACLG GPADTYARLN EPQVCVSTTN RNFPGRMGHK EGQIYLASPY TAAASALTGR
501: VADPREFLQ

Arabidopsis Description

IIL13-isopropylmalate dehydratase large subunit, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q94AR8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.