Factsheet for HORVU6Hr1G013950.5

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
Predotar:	plastid
TargetP:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G108100.2	Wheat	plastid	92.48	97.23
TraesCS6D01G074300.1	Wheat	plastid	92.48	96.47
TraesCS6A01G080600.1	Wheat	plastid	92.29	96.27
TraesCS2B01G181900.1	Wheat	plastid	86.84	92.22
Zm00001d015088_P002	Maize	plastid	86.28	90.89
EES06213	Sorghum	plastid	86.47	90.73
Os02t0125100-01	Rice	plastid	86.84	89.88
Zm00001d053960_P003	Maize	plastid	84.21	88.71
GSMUA_Achr2P20910_001	Banana	plastid	69.36	84.63
PGSC0003DMT400003947	Potato	cytosol	28.95	81.91
PGSC0003DMT400003942	Potato	cytosol	28.95	81.91
KRH17398	Soybean	nucleus	76.88	81.8
PGSC0003DMT400035003	Potato	cytosol, plastid	76.69	80.16
VIT_05s0049g01980.t01	Wine grape	plastid	76.5	80.12
VIT_08s0056g01640.t01	Wine grape	plastid	77.44	80.0
Solyc03g005730.2.1	Tomato	plastid	76.5	79.96
Bra040341.1-P	Field mustard	plastid	73.12	77.18
CDY43713	Canola	plastid	72.93	76.98
CDY56070	Canola	plastid	72.74	76.63
Solyc09g090900.2.1	Tomato	plastid	72.37	76.24
AT4G13430.1	Thale cress	plastid	72.93	76.23
CDY01130	Canola	plastid	72.74	76.18
GSMUA_Achr10P...	Banana	cytosol	33.65	76.17
Bra032708.1-P	Field mustard	plastid	72.93	76.08
CDY47367	Canola	plastid	72.74	76.03
KRG92248	Soybean	plastid	70.3	74.06
Zm00001d053941_P001	Maize	cytosol	48.87	73.45
CDX87247	Canola	cytosol	15.79	59.15
Zm00001d053950_P001	Maize	cytosol	24.25	54.89
KRH05916	Soybean	plastid	77.07	42.75
HORVU7Hr1G045470.22	Barley	cytosol	19.55	12.86
HORVU4Hr1G080640.1	Barley	mitochondrion	21.05	12.1
HORVU6Hr1G091950.9	Barley	cytosol	18.8	10.91

Protein Annotations

KEGG:00290+4.2.1.33	Gene3D:3.30.499.10	Gene3D:3.30.499.20	MapMan:4.1.3.2.5.2.1	MapMan:9.5.1.3.1	UniProt:A0A287TDK1
InterPro:Acnase/IPM_dHydase_lsu_aba_1/3	InterPro:Acoase/IPM_deHydtase_lsu_aba	InterPro:Aconitase_4Fe-4S_dom	GO:GO:0003674	GO:GO:0003824	GO:GO:0003861
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150
GO:GO:0008152	GO:GO:0008652	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570
GO:GO:0009987	GO:GO:0016836	GO:GO:0019748	GO:GO:0019761	GO:GO:0046686	GO:GO:0050486
GO:GO:0051539	EnsemblPlantsGene:HORVU6Hr1G013950	EnsemblPlants:HORVU6Hr1G013950.5	InterPro:Homoacnase/IPMdehydase_lsu	InterPro:IPMI_cat	InterPro:IPR015931
PFAM:PF00330	PRINTS:PR00415	PANTHER:PTHR43822	SUPFAM:SSF53732	TIGRFAMs:TIGR01343	UniParc:UPI000B4848F6
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chrchr6H:-:29453764..29459393

Molecular Weight (calculated)

57374.3 Da

IEP (calculated)

8.194

GRAVY (calculated)

-0.278

Length

532 amino acids

Sequence
(BLAST)

001: MASISAAAKA TSAAFAHKVP SPPLPSPLPP QASHPCSPRR RRSSPRRRRS SSSARAPAAG AXGRGRVRAV ATPTRAPRSP ASTGSVKSPM TTTEKILARA
101: SERASLEPGE NVWVDVDVLM THDVCGPGTI GIFKQEFGED AKVWDREKVV IIPDHYIFTA DERANRNVDI LRDFCQEQKI KYFYDIKDLS DFRANPDYKG
201: VCHIALAQEG HCRPGEVLLG TDSHTCNAGA FGQFATGIGN TDAGFVMGTG KALLKVPPTI RFVLDGEMPP YLLAKDLILQ IIGEISVSGA TYRSMEFVGS
301: TIESLTMEER MTLCNMVIEA GGKNGVVPAD ETTFKYLEGK TSVEYEPVYS DAQARFYSDY RFDVSKLEPV VAKPHSPDNR ALARECKDVK IDRVYIGSCT
401: GGKTEDFIAA AKVFLASGKK VKVPTFLVPA TQKVWMDVYS LPVPGSGGKT CSQIFEEAGC DTPASPNCGA CLGGPRDTYA RMNEPTVCVS TTNRNFPGRM
501: GHKEGQIYLA SPFTAAASAL TGYVTDPRDF LS

Best Arabidopsis Sequence Match ( AT4G13430.1 )
(BLAST)

001: MASVISSSPF LCKSSSKSDL GISSFPKSSQ ISIHRCQKKS ISRKIVSVMA PQKDRSPGTT GSVKTGMTMT EKILARASEK SLVVPGDNIW VNVDVLMTHD
101: VCGPGAFGIF KREFGEKAKV WDPEKIVVIP DHYIFTADKR ANRNVDIMRE HCREQNIKYF YDITDLGNFK ANPDYKGVCH VALAQEGHCR PGEVLLGTDS
201: HTCTAGAFGQ FATGIGNTDA GFVLGTGKIL LKVPPTMRFI LDGEMPSYLQ AKDLILQIIG EISVAGATYK TMEFSGTTIE SLSMEERMTL CNMVVEAGGK
301: NGVIPPDATT LNYVENRTSV PFEPVYSDGN ASFVADYRFD VSKLEPVVAK PHSPDNRALA RECKDVKIDR VYIGSCTGGK TEDFMAAAKL FHAAGRKVKV
401: PTFLVPATQK VWMDVYALPV PGAGGKTCAQ IFEEAGCDTP ASPSCGACLG GPADTYARLN EPQVCVSTTN RNFPGRMGHK EGQIYLASPY TAAASALTGR
501: VADPREFLQ

Arabidopsis Description

IIL13-isopropylmalate dehydratase large subunit, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q94AR8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.