Factsheet for Zm00001d053941_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d053950_P001	Maize	cytosol	59.04	88.94
GSMUA_Achr2P20910_001	Banana	plastid	67.51	54.82
Zm00001d053960_P003	Maize	plastid	76.55	53.66
Zm00001d015088_P002	Maize	plastid	74.01	51.88
TraesCS6B01G108100.2	Wheat	plastid	73.45	51.38
TraesCS2B01G181900.1	Wheat	plastid	72.6	51.3
TraesCS6D01G074300.1	Wheat	plastid	73.73	51.18
TraesCS6A01G080600.1	Wheat	plastid	73.45	50.98
KRH17398	Soybean	nucleus	70.34	49.8
Os02t0125100-01	Rice	plastid	71.75	49.42
VIT_08s0056g01640.t01	Wine grape	plastid	71.47	49.13
HORVU6Hr1G013950.5	Barley	plastid	73.45	48.87
VIT_05s0049g01980.t01	Wine grape	plastid	70.06	48.82
Solyc03g005730.2.1	Tomato	plastid	69.21	48.13
PGSC0003DMT400035003	Potato	cytosol, plastid	69.21	48.13
CDX87247	Canola	cytosol	18.64	46.48
Bra040341.1-P	Field mustard	plastid	64.69	45.44
CDY56070	Canola	plastid	64.69	45.35
CDY01130	Canola	plastid	64.97	45.28
CDY43713	Canola	plastid	64.41	45.24
Bra032708.1-P	Field mustard	plastid	64.69	44.9
AT4G13430.1	Thale cress	plastid	64.41	44.79
CDY47367	Canola	plastid	64.41	44.79
Solyc09g090900.2.1	Tomato	plastid	63.56	44.55
KRG92248	Soybean	plastid	62.71	43.96
GSMUA_Achr10P...	Banana	cytosol	26.84	40.43
PGSC0003DMT400003942	Potato	cytosol	19.77	37.23
PGSC0003DMT400003947	Potato	cytosol	19.77	37.23
KRH05916	Soybean	plastid	71.19	26.28
Zm00001d020428_P001	Maize	cytosol	7.63	10.04
Zm00001d032214_P001	Maize	mitochondrion, plastid	8.19	8.12
Zm00001d035277_P001	Maize	cytosol, mitochondrion, plastid	11.86	8.0
Zm00001d024952_P005	Maize	cytosol	19.77	7.85
Zm00001d049409_P001	Maize	plasma membrane	19.49	6.99
Zm00001d004564_P004	Maize	plastid	19.49	6.88
Zm00001d048358_P002	Maize	plastid	18.64	6.67
Zm00001d006476_P004	Maize	mitochondrion	18.64	6.61
Zm00001d027558_P003	Maize	plastid	18.64	6.45
Zm00001d015497_P001	Maize	cytosol	3.67	4.64
Zm00001d040769_P001	Maize	mitochondrion	3.67	4.64

Protein Annotations

EnsemblPlants:Zm00001d053941_P001	EnsemblPlants:Zm00001d053941_T001	EnsemblPlantsGene:Zm00001d053941	Gene3D:3.30.499.10	Gene3D:3.30.499.20	GO:GO:0008150
GO:GO:0008152	InterPro:Acnase/IPM_dHydase_lsu_aba_1/3	InterPro:Acoase/IPM_deHydtase_lsu_aba	InterPro:Aconitase_4Fe-4S_dom	InterPro:IPR015931	KEGG:00290+4.2.1.33
PANTHER:PTHR43822	PFAM:PF00330	PRINTS:PR00415	ProteinID:AQK60834.1	SEG:seg	SUPFAM:SSF53732
UniParc:UPI00084469A0	UniProt:A0A1D6QTU4	MapMan:35.1	:	:	:

Description

3-isopropylmalate dehydratase large subunit

Coordinates

chr4:-:243904766..243907378

Molecular Weight (calculated)

39006.3 Da

IEP (calculated)

5.121

GRAVY (calculated)

-0.148

Length

354 amino acids

Sequence
(BLAST)

001: MDEIHVLSGT DATQEGDGSL VVGGAAIVVV GSHVARRDVL AADGWMDMID DDQLWVDGGG VVHRSALIHS LDIFKKEFGA RVWDREKLVV IPDHYIFTSD
101: DRANRNVDIL RDFCAEQNVK YFYDIKDLRQ RFRSYKGVCH CRPGEVLLGT DSHTCNAGAF GQFATGIGNT DAYKLCYICS FLRIYHIIGE ISVSGATYKS
201: MEFVGSTVES LTMEERMTLC NMVIEAGGKN GVVPADETTF KYLEGKTSVD YEPVYSDAQA RFFSDYRFDV SKLEPVVAKG KKVKVPTFLV PATQKVWLDV
301: YSLPVPGSGG KTCSQVFEEA GCDTPASPNC GACLGGPRDT YARMNEPTAF RCCY

Best Arabidopsis Sequence Match ( AT4G13430.1 )
(BLAST)

001: MASVISSSPF LCKSSSKSDL GISSFPKSSQ ISIHRCQKKS ISRKIVSVMA PQKDRSPGTT GSVKTGMTMT EKILARASEK SLVVPGDNIW VNVDVLMTHD
101: VCGPGAFGIF KREFGEKAKV WDPEKIVVIP DHYIFTADKR ANRNVDIMRE HCREQNIKYF YDITDLGNFK ANPDYKGVCH VALAQEGHCR PGEVLLGTDS
201: HTCTAGAFGQ FATGIGNTDA GFVLGTGKIL LKVPPTMRFI LDGEMPSYLQ AKDLILQIIG EISVAGATYK TMEFSGTTIE SLSMEERMTL CNMVVEAGGK
301: NGVIPPDATT LNYVENRTSV PFEPVYSDGN ASFVADYRFD VSKLEPVVAK PHSPDNRALA RECKDVKIDR VYIGSCTGGK TEDFMAAAKL FHAAGRKVKV
401: PTFLVPATQK VWMDVYALPV PGAGGKTCAQ IFEEAGCDTP ASPSCGACLG GPADTYARLN EPQVCVSTTN RNFPGRMGHK EGQIYLASPY TAAASALTGR
501: VADPREFLQ

Arabidopsis Description

IIL13-isopropylmalate dehydratase large subunit, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q94AR8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.