Factsheet for Os02t0125100-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
nucleus 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

plastid: 21433289
plastid: 27992503

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES06213	Sorghum	plastid	91.44	92.7
TraesCS6D01G074300.1	Wheat	plastid	91.44	92.16
TraesCS6A01G080600.1	Wheat	plastid	91.25	91.96
TraesCS6B01G108100.2	Wheat	plastid	90.47	91.9
Zm00001d015088_P002	Maize	plastid	89.49	91.09
Zm00001d053960_P003	Maize	plastid	87.55	89.11
TraesCS2B01G181900.1	Wheat	plastid	86.58	88.82
HORVU6Hr1G013950.5	Barley	plastid	89.88	86.84
GSMUA_Achr2P20910_001	Banana	plastid	71.98	84.86
KRH17398	Soybean	nucleus	81.32	83.6
PGSC0003DMT400003947	Potato	cytosol	30.16	82.45
PGSC0003DMT400003942	Potato	cytosol	30.16	82.45
VIT_08s0056g01640.t01	Wine grape	plastid	81.13	80.97
VIT_05s0049g01980.t01	Wine grape	plastid	79.57	80.51
PGSC0003DMT400035003	Potato	cytosol, plastid	79.57	80.35
Solyc03g005730.2.1	Tomato	plastid	79.57	80.35
AT4G13430.1	Thale cress	plastid	76.26	77.01
CDY56070	Canola	plastid	75.49	76.83
Solyc09g090900.2.1	Tomato	plastid	75.49	76.83
Bra040341.1-P	Field mustard	plastid	75.29	76.79
CDY43713	Canola	plastid	75.1	76.59
CDY01130	Canola	plastid	75.29	76.18
Bra032708.1-P	Field mustard	plastid	75.1	75.69
CDY47367	Canola	plastid	74.9	75.64
GSMUA_Achr10P...	Banana	cytosol	34.44	75.32
KRG92248	Soybean	plastid	71.98	73.27
Zm00001d053941_P001	Maize	cytosol	49.42	71.75
CDX87247	Canola	cytosol	17.12	61.97
Zm00001d053950_P001	Maize	cytosol	25.49	55.74
KRH05916	Soybean	plastid	81.52	43.69
Os06t0303400-00	Rice	plasma membrane	21.79	13.66
Os03t0136900-01	Rice	mitochondrion	20.82	10.85
Os08t0191100-01	Rice	mitochondrion	0.0	0.0

Protein Annotations

KEGG:00290+4.2.1.33	Gene3D:3.30.499.10	Gene3D:3.30.499.20	MapMan:4.1.3.2.5.2.1	EntrezGene:4328147	MapMan:9.5.1.3.1
EMBL:AK101889	InterPro:Acnase/IPM_dHydase_lsu_aba_1/3	InterPro:Acoase/IPM_deHydtase_lsu_aba	InterPro:Aconitase_4Fe-4S_dom	ProteinID:BAD07969.1	ProteinID:BAF07657.1
ProteinID:BAS76755.1	ProteinID:EEE56219.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0003861	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152
GO:GO:0008652	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009987
GO:GO:0016836	GO:GO:0019748	GO:GO:0019761	GO:GO:0046686	GO:GO:0050486	GO:GO:0051539
InterPro:Homoacnase/IPMdehydase_lsu	InterPro:IPMI_cat	InterPro:IPR015931	EnsemblPlantsGene:Os02g0125100	EnsemblPlants:Os02t0125100-01	PFAM:PF00330
PRINTS:PR00415	PANTHER:PTHR43822	UniProt:Q6Z702	SUPFAM:SSF53732	TIGRFAMs:TIGR01343	UniParc:UPI000023685C
RefSeq:XP_015625698.1	SEG:seg	:	:	:	:

Description

Homoaconitase/3-isopropylmalate dehydratase, small/large subunit domain containing protein. (Os02t0125100-01)

Coordinates

chr2:-:1304905..1309799

Molecular Weight (calculated)

55543.4 Da

IEP (calculated)

7.366

GRAVY (calculated)

-0.172

Length

514 amino acids

Sequence
(BLAST)

001: MASISAASPV AGKAAAFAHK NELAAAAVAP SQQQLQRRVS GRRARSGRVR AVATPARAPR APSSTGSVKS AMTMTEKILA RASERASLEP GENVWVDVDV
101: LMTHDVCGPG TIGIFKREFG EDAKVWDREK VVIIPDHYIF TSDERANRNV DILRDFCMEQ NIKYFYDIKD LSNFKANPDY KGVCHVALAQ EGHCRPGEVL
201: LGTDSHTCNA GAFGQFATGI GNTDAGFVMG TGKALLKVPP TIRFVLDGEM PPYLLAKDLI LQIIGEISVS GATYKSMEFV GSTVESLNME ERMTLCNMVI
301: EAGGKNGVVP ADQTTFNYLE GKTSVEYEPV YSDAQARFVS DYRFDVSKLE PVIAKPHSPD NRALARECKD VKIDRVYIGS CTGGKTEDFF AAAKVFLASG
401: KKVKVPTFLV PATQKVWMDI YSIPVPGAGG KTCSQIFEEA GCDTPASPSC GACLGGPRDT YARMNEPMVC VSTTNRNFPG RMGHKEGQIY LASPFTAAAS
501: ALTGYVTDPR DFLM

Best Arabidopsis Sequence Match ( AT4G13430.1 )
(BLAST)

001: MASVISSSPF LCKSSSKSDL GISSFPKSSQ ISIHRCQKKS ISRKIVSVMA PQKDRSPGTT GSVKTGMTMT EKILARASEK SLVVPGDNIW VNVDVLMTHD
101: VCGPGAFGIF KREFGEKAKV WDPEKIVVIP DHYIFTADKR ANRNVDIMRE HCREQNIKYF YDITDLGNFK ANPDYKGVCH VALAQEGHCR PGEVLLGTDS
201: HTCTAGAFGQ FATGIGNTDA GFVLGTGKIL LKVPPTMRFI LDGEMPSYLQ AKDLILQIIG EISVAGATYK TMEFSGTTIE SLSMEERMTL CNMVVEAGGK
301: NGVIPPDATT LNYVENRTSV PFEPVYSDGN ASFVADYRFD VSKLEPVVAK PHSPDNRALA RECKDVKIDR VYIGSCTGGK TEDFMAAAKL FHAAGRKVKV
401: PTFLVPATQK VWMDVYALPV PGAGGKTCAQ IFEEAGCDTP ASPSCGACLG GPADTYARLN EPQVCVSTTN RNFPGRMGHK EGQIYLASPY TAAASALTGR
501: VADPREFLQ

Arabidopsis Description

IIL13-isopropylmalate dehydratase large subunit, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q94AR8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.