Factsheet for Zm00001d015088_P002

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES06213	Sorghum	plastid	96.63	96.25
Zm00001d053960_P003	Maize	plastid	93.27	93.27
TraesCS6D01G074300.1	Wheat	plastid	92.28	91.37
TraesCS6B01G108100.2	Wheat	plastid	91.49	91.3
TraesCS6A01G080600.1	Wheat	plastid	92.08	91.18
Os02t0125100-01	Rice	plastid	91.09	89.49
TraesCS2B01G181900.1	Wheat	plastid	87.92	88.62
HORVU6Hr1G013950.5	Barley	plastid	90.89	86.28
GSMUA_Achr2P20910_001	Banana	plastid	73.86	85.55
KRH17398	Soybean	nucleus	82.97	83.8
PGSC0003DMT400003942	Potato	cytosol	30.69	82.45
PGSC0003DMT400003947	Potato	cytosol	30.69	82.45
Solyc03g005730.2.1	Tomato	plastid	82.97	82.32
PGSC0003DMT400035003	Potato	cytosol, plastid	82.77	82.12
VIT_08s0056g01640.t01	Wine grape	plastid	83.56	81.94
VIT_05s0049g01980.t01	Wine grape	plastid	82.18	81.69
Bra040341.1-P	Field mustard	plastid	78.22	78.37
CDY56070	Canola	plastid	78.22	78.22
CDY43713	Canola	plastid	78.02	78.17
CDY01130	Canola	plastid	78.61	78.15
Bra032708.1-P	Field mustard	plastid	78.42	77.65
CDY47367	Canola	plastid	78.22	77.6
AT4G13430.1	Thale cress	plastid	77.23	76.62
Solyc09g090900.2.1	Tomato	plastid	76.24	76.24
GSMUA_Achr10P...	Banana	cytosol	35.45	76.17
KRG92248	Soybean	plastid	74.06	74.06
Zm00001d053941_P001	Maize	cytosol	51.88	74.01
CDX87247	Canola	cytosol	16.83	59.86
Zm00001d053950_P001	Maize	cytosol	26.34	56.6
KRH05916	Soybean	plastid	83.17	43.8
Zm00001d020428_P001	Maize	cytosol	8.71	16.36
Zm00001d032214_P001	Maize	mitochondrion, plastid	9.11	12.89
Zm00001d024952_P005	Maize	cytosol	21.98	12.44
Zm00001d035277_P001	Maize	cytosol, mitochondrion, plastid	12.67	12.19
Zm00001d049409_P001	Maize	plasma membrane	22.77	11.65
Zm00001d006476_P004	Maize	mitochondrion	22.18	11.22
Zm00001d004564_P004	Maize	plastid	22.18	11.17
Zm00001d048358_P002	Maize	plastid	21.39	10.92
Zm00001d027558_P003	Maize	plastid	21.58	10.64
Zm00001d040769_P001	Maize	mitochondrion	3.96	7.14
Zm00001d015497_P001	Maize	cytosol	3.96	7.14

Protein Annotations

KEGG:00290+4.2.1.33	EntrezGene:100284902	Gene3D:3.30.499.10	Gene3D:3.30.499.20	MapMan:4.1.3.2.5.2.1	MapMan:9.5.1.3.1
ProteinID:AQK68052.1	ProteinID:AQK68053.1	InterPro:Acnase/IPM_dHydase_lsu_aba_1/3	InterPro:Acoase/IPM_deHydtase_lsu_aba	InterPro:Aconitase_4Fe-4S_dom	EMBL:BT088164
UniProt:C4JBG7	GO:GO:0003674	GO:GO:0003824	GO:GO:0003861	GO:GO:0005488	GO:GO:0008150
GO:GO:0008152	GO:GO:0008652	GO:GO:0009058	GO:GO:0009987	GO:GO:0016836	GO:GO:0051539
InterPro:Homoacnase/IPMdehydase_lsu	InterPro:IPMI_cat	InterPro:IPR015931	PFAM:PF00330	PRINTS:PR00415	PANTHER:PTHR43822
SUPFAM:SSF53732	TIGRFAMs:TIGR01343	UniParc:UPI0001890C19	EnsemblPlantsGene:Zm00001d015088	EnsemblPlants:Zm00001d015088_P002	EnsemblPlants:Zm00001d015088_T002
SEG:seg	:	:	:	:	:

Description

3-isopropylmalate dehydratase large subunit

Coordinates

chr5:-:75060623..75064705

Molecular Weight (calculated)

54658.3 Da

IEP (calculated)

7.157

GRAVY (calculated)

-0.196

Length

505 amino acids

Sequence
(BLAST)

001: MASSISAAAK ASAAFAHKKE LAAPAPHRAG SSRRTKPCRV RAVASPARTP RAPSSTGSVK TAMTMTEKIL ARASERAALE PGENVWVDID VLMTHDVCGP
101: GTIGIFKKEF GEDAKVWDRE KVVIIPDHYI FTSDERANRN VDILRDFCLE QNIKYFYDIK DLSDFRANPD YKGVCHIALA QEGHCRPGEV LLGTDSHTCN
201: AGAFGQFATG IGNTDAGFVM GTGKALLKVP PTIRFVLDGE MPPYLLAKDL ILQIIGEISV SGATYKSMEF VGSTVESLTM EERMTLCNMV VEAGGKNGVV
301: PADETTFKYL EGRTSVDYQP VYSDAEARFF SDYRFDVSKL EPVVAKPHSP DNRALARECK DVKIDRVYIG SCTGGKTEDF LAAAKVFLAS GKKVKVPTFL
401: VPATQKVWMD VYSLPVPGSG GKTCAQIFEE AGCDTPASPN CGACLGGPRD TYARMNEPTV CVSTTNRNFP GRMGHKEGQI YLASPYTAAA SALTGYVTDP
501: RDFLM

Best Arabidopsis Sequence Match ( AT4G13430.1 )
(BLAST)

001: MASVISSSPF LCKSSSKSDL GISSFPKSSQ ISIHRCQKKS ISRKIVSVMA PQKDRSPGTT GSVKTGMTMT EKILARASEK SLVVPGDNIW VNVDVLMTHD
101: VCGPGAFGIF KREFGEKAKV WDPEKIVVIP DHYIFTADKR ANRNVDIMRE HCREQNIKYF YDITDLGNFK ANPDYKGVCH VALAQEGHCR PGEVLLGTDS
201: HTCTAGAFGQ FATGIGNTDA GFVLGTGKIL LKVPPTMRFI LDGEMPSYLQ AKDLILQIIG EISVAGATYK TMEFSGTTIE SLSMEERMTL CNMVVEAGGK
301: NGVIPPDATT LNYVENRTSV PFEPVYSDGN ASFVADYRFD VSKLEPVVAK PHSPDNRALA RECKDVKIDR VYIGSCTGGK TEDFMAAAKL FHAAGRKVKV
401: PTFLVPATQK VWMDVYALPV PGAGGKTCAQ IFEEAGCDTP ASPSCGACLG GPADTYARLN EPQVCVSTTN RNFPGRMGHK EGQIYLASPY TAAASALTGR
501: VADPREFLQ

Arabidopsis Description

IIL13-isopropylmalate dehydratase large subunit, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q94AR8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.