Factsheet for PGSC0003DMT400003942

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 3
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400003947	Potato	cytosol	100.0	100.0
GSMUA_Achr10P...	Banana	cytosol	60.11	48.09
Solyc09g090900.2.1	Tomato	plastid	93.62	34.85
PGSC0003DMT400035003	Potato	cytosol, plastid	84.57	31.24
TraesCS2B01G181900.1	Wheat	plastid	82.98	31.14
VIT_08s0056g01640.t01	Wine grape	plastid	84.57	30.87
EES06213	Sorghum	plastid	82.98	30.77
Zm00001d015088_P002	Maize	plastid	82.45	30.69
VIT_05s0049g01980.t01	Wine grape	plastid	82.45	30.51
Zm00001d053960_P003	Maize	plastid	81.91	30.5
KRG92248	Soybean	plastid	81.38	30.3
TraesCS6B01G108100.2	Wheat	plastid	81.38	30.24
TraesCS6A01G080600.1	Wheat	plastid	81.91	30.2
TraesCS6D01G074300.1	Wheat	plastid	81.91	30.2
Bra040341.1-P	Field mustard	plastid	80.85	30.16
Os02t0125100-01	Rice	plastid	82.45	30.16
CDY56070	Canola	plastid	80.85	30.1
CDY43713	Canola	plastid	80.32	29.96
CDY01130	Canola	plastid	80.85	29.92
CDY47367	Canola	plastid	80.85	29.86
AT4G13430.1	Thale cress	plastid	80.85	29.86
Bra032708.1-P	Field mustard	plastid	80.85	29.8
HORVU6Hr1G013950.5	Barley	plastid	81.91	28.95
GSMUA_Achr2P20910_001	Banana	plastid	63.3	27.29
Zm00001d053941_P001	Maize	cytosol	37.23	19.77
PGSC0003DMT400022547	Potato	mitochondrion, plastid	23.94	4.59
PGSC0003DMT400057191	Potato	plastid	22.87	4.55
PGSC0003DMT400074489	Potato	cytosol, extracellular	23.4	4.41
CDX87247	Canola	cytosol	2.13	2.82
Zm00001d053950_P001	Maize	cytosol	0.53	0.43

Protein Annotations

EnsemblPlants:PGSC0003DMT400003942	EnsemblPlantsGene:PGSC0003DMG402001552	Gene3D:3.30.499.10	GO:GO:0008150	GO:GO:0008152	InterPro:Acnase/IPM_dHydase_lsu_aba_1/3
InterPro:Acoase/IPM_deHydtase_lsu_aba	InterPro:Aconitase_4Fe-4S_dom	InterPro:IPR015931	KEGG:00290+4.2.1.33	PANTHER:PTHR43822	PFAM:PF00330
PGSC:PGSC0003DMG402001552	SUPFAM:SSF53732	UniParc:UPI000296E02A	UniProt:M0ZML7	MapMan:4.1.3.2.5.2.1	MapMan:9.5.1.3.1

Description

3-isopropylmalate dehydratase [Source:PGSC_GENE;Acc:PGSC0003DMG402001552]

Coordinates

chr9:+:57319679..57322509

Molecular Weight (calculated)

20473.5 Da

IEP (calculated)

7.071

GRAVY (calculated)

-0.208

Length

188 amino acids

Sequence
(BLAST)

001: MTYEVIAINS RFLAEYHFDI SKLEPLVAKH HSPGNRALAR ECEDVKIDRV YIGSCTGGKT EDFMAAAKVF LASGKKVKVP TFLVPAMQKV WMDLYTIPVP
101: ESDGKTCSQI FEDAGCDAPA SPSCGACMGG PRDTHARLNE PQVCVSTTNR NFPGRMGHKE GQIYLASPYT AAASALTGHV TDLRDFLQ

Best Arabidopsis Sequence Match ( AT4G13430.1 )
(BLAST)

001: MASVISSSPF LCKSSSKSDL GISSFPKSSQ ISIHRCQKKS ISRKIVSVMA PQKDRSPGTT GSVKTGMTMT EKILARASEK SLVVPGDNIW VNVDVLMTHD
101: VCGPGAFGIF KREFGEKAKV WDPEKIVVIP DHYIFTADKR ANRNVDIMRE HCREQNIKYF YDITDLGNFK ANPDYKGVCH VALAQEGHCR PGEVLLGTDS
201: HTCTAGAFGQ FATGIGNTDA GFVLGTGKIL LKVPPTMRFI LDGEMPSYLQ AKDLILQIIG EISVAGATYK TMEFSGTTIE SLSMEERMTL CNMVVEAGGK
301: NGVIPPDATT LNYVENRTSV PFEPVYSDGN ASFVADYRFD VSKLEPVVAK PHSPDNRALA RECKDVKIDR VYIGSCTGGK TEDFMAAAKL FHAAGRKVKV
401: PTFLVPATQK VWMDVYALPV PGAGGKTCAQ IFEEAGCDTP ASPSCGACLG GPADTYARLN EPQVCVSTTN RNFPGRMGHK EGQIYLASPY TAAASALTGR
501: VADPREFLQ

Arabidopsis Description

IIL13-isopropylmalate dehydratase large subunit, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q94AR8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.