Factsheet for PGSC0003DMT400074489

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

plastid 5
mitochondrion 6
cytosol 1

Predictors

GFP

MS/MS

Papers

cytosol: 22313117
extracellular: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g052350.2.1	Tomato	plastid	98.6	98.79
PGSC0003DMT400022547	Potato	mitochondrion, plastid	86.96	88.38
KRH26786	Soybean	mitochondrion	84.35	85.47
KRH22567	Soybean	mitochondrion	84.25	85.37
KRH56130	Soybean	mitochondrion	83.65	85.19
VIT_12s0059g02150.t01	Wine grape	plastid	84.05	84.9
KRH25376	Soybean	mitochondrion	83.75	84.86
CDY18054	Canola	plastid	82.75	83.67
CDX97969	Canola	plastid	83.05	83.55
AT2G05710.1	Thale cress	plastid	82.85	83.43
CDX93088	Canola	plastid	83.15	83.4
CDY50945	Canola	plastid	83.05	83.22
Bra019845.1-P	Field mustard	plastid	82.65	83.15
KRH15702	Soybean	mitochondrion	16.55	82.5
PGSC0003DMT400057191	Potato	plastid	76.13	80.32
CDY56501	Canola	plastid	77.43	79.34
Bra015165.1-P	Field mustard	plastid	67.3	66.04
PGSC0003DMT400003942	Potato	cytosol	4.41	23.4
PGSC0003DMT400003947	Potato	cytosol	4.41	23.4
PGSC0003DMT400035003	Potato	cytosol, plastid	11.53	22.59

Protein Annotations

KEGG:00020+4.2.1.3	KEGG:00290+4.2.1.33	KEGG:00630+4.2.1.3	KEGG:00720+4.2.1.3	Gene3D:1.10.1440.20	EntrezGene:102587698
MapMan:2.3.2	Gene3D:3.20.19.10	Gene3D:3.30.499.10	Gene3D:3.30.499.20	MapMan:5.7.3.6.2	InterPro:Acnase/IPM_dHydase_lsu_aba_1/3
InterPro:Acoase/IPM_deHydtase_lsu_aba	InterPro:Aconitase/3IPM_dehydase_swvl	InterPro:Aconitase/IRP2	InterPro:AconitaseA/IPMdHydase_ssu_swvl	InterPro:Aconitase_4Fe-4S_BS	InterPro:Aconitase_4Fe-4S_dom
ProteinID:CAA65735	ProteinID:CAA65735.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0003994	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005975	GO:GO:0006097
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016829	GO:GO:0046872	GO:GO:0051536
GO:GO:0051539	InterPro:IPR015928	InterPro:IPR015931	UniProt:M1CTR3	PFAM:PF00330	PFAM:PF00694
EnsemblPlantsGene:PGSC0003DMG400028951	PGSC:PGSC0003DMG400028951	EnsemblPlants:PGSC0003DMT400074489	PRINTS:PR00415	ScanProsite:PS00450	ScanProsite:PS01244
PANTHER:PTHR11670	PANTHER:PTHR11670:SF50	SUPFAM:SSF52016	SUPFAM:SSF53732	TIGRFAMs:TIGR01341	UniParc:UPI0002965C0C
EMBL:X97012	RefSeq:XP_006366590.1	SEG:seg	:	:	:

Description

Aconitase [Source:PGSC_GENE;Acc:PGSC0003DMG400028951]

Coordinates

chr7:+:46941356..46949785

Molecular Weight (calculated)

108346.0 Da

IEP (calculated)

7.600

GRAVY (calculated)

-0.169

Length

997 amino acids

Sequence
(BLAST)

001: MYSNTARKYS SSAASSLLRA SSSVTRPLAS TSSAAHAPCR AGAGVNSGNQ QRYSSTLRSL RCSVPRWSHG VDWKSPISLT AQIRTAAPAL NGFHRKLATM
101: AAENPFKGIL TGLPKPGGGE FGKFYSLPAL NDPRIDKLPY SIRILLESAI RNCDNFQVKK EDVEKIIDWE KSAPKLVEIP FKPARVLLQD FTGVPAVVDL
201: ACMRDAMNNL GSDSDKINPL VPVDLVIDHS VQVDVTRSEN AVQANMELEF QRNKERFAFL KWGSNAFQNM LVVPPGSGIV HQVNLEYLGR VVFNREGLLY
301: PDSVVGTDSH TTMIDGLGVA GWGVGGIEAE AAMLGQPMSM VLPGVVGFKL SGNLRNGVTA TDLVLTVTQM LRKHGVVGKF VEFYGGGMSG LSLADRATIA
401: NMAPEYGATM GFFPVDHVTL EYLKLTGRSD EIVGMVEAYL RANNMFVDYN EPQQEKVYSS YLNLDLADVE PCLSGPKRPH DRVPLKEMKS DWHACLDNKV
501: GFKGFAVPKE VQDKVAKFSF HGQPAELKHG SVVIAAITSC TNTSNPSVML GAALVAKKAS ELGLHVKPWV KTSLAPGSGV VTKYLLKSGL QKYLNQQGFN
601: IVGYGCTTCI GNSGDLDESV ASAISENDIV AAAVLSGNRN FEGRVHALTR ANYLASPPLV VAYALAGTVD IDFEKDPIGV GKDGKDVYFR DIWPSTEEIA
701: EVVQSSVLPD MFKSTYEAIT KGNTMWNELS VPTTKLYQWD PKSTYIHEPP YFKGMTMDPP GPHGVKDAYC LLNFGDSITT DHISPAGSIH KDSPAARYLM
801: ERGVDRRDFN SYGSRRGNDE IMARGTFANI RLVNKLLNGE VGPKTVHVPS GEKLSVFDAA MKYKSAGQST IILAGAEYGS GSSRDWAAKG PMLLGVKAVI
901: AKSFERIHRS NLVGMGIVPL CFKAGEDADT LGLTGQERYT IDLPENISEI RPGQDVTVQT DTGKSFTCIV RFDTEVELAY FNHGGILQYV IRQLTQR

Best Arabidopsis Sequence Match ( AT2G05710.1 )
(BLAST)

001: MYLTASSSAS SSIIRAASSR SSSLFSFRSV LSPSVSSTSP SSLLARRSFG TISPAFRRWS HSFHSKPSPF RFTSQIRAVS PVLDRLQRTF SSMASEHPFK
101: GIFTTLPKPG GGEFGKFYSL PALNDPRVDK LPYSIRILLE SAIRNCDNFQ VTKEDVEKII DWEKTSPKQV EIPFKPARVL LQDFTGVPAV VDLACMRDAM
201: NKLGSDSNKI NPLVPVDLVI DHSVQVDVAR SENAVQANME LEFQRNKERF AFLKWGSTAF QNMLVVPPGS GIVHQVNLEY LGRVVFNTKG LLYPDSVVGT
301: DSHTTMIDGL GVAGWGVGGI EAEATMLGQP MSMVLPGVVG FKLAGKMRNG VTATDLVLTV TQMLRKHGVV GKFVEFYGNG MSGLSLADRA TIANMSPEYG
401: ATMGFFPVDH VTLQYLKLTG RSDETVAMIE AYLRANNMFV DYNEPQQDRV YSSYLELNLD DVEPCISGPK RPHDRVTLKE MKADWHSCLD SKVGFKGFAI
501: PKEAQEKVVN FSFDGQPAEL KHGSVVIAAI TSCTNTSNPS VMLGAGLVAK KACDLGLQVK PWIKTSLAPG SGVVTKYLLK SGLQEYLNEQ GFNIVGYGCT
601: TCIGNSGEIN ESVGAAITEN DIVAAAVLSG NRNFEGRVHP LTRANYLASP PLVVAYALAG TVNIDFETEP IGKGKNGKDV FLRDIWPTTE EIAEVVQSSV
701: LPDMFRATYE SITKGNPMWN KLSVPENTLY SWDPNSTYIH EPPYFKDMTM DPPGPHNVKD AYCLLNFGDS ITTDHISPAG NIQKDSPAAK FLMERGVDRK
801: DFNSYGSRRG NDEIMARGTF ANIRIVNKLM NGEVGPKTVH IPSGEKLSVF DAAMRYKSSG EDTIILAGAE YGSGSSRDWA AKGPMLQGVK AVIAKSFERI
901: HRSNLVGMGI IPLCFKSGED ADTLGLTGHE RYTIHLPTDI SEIRPGQDVT VTTDNGKSFT CTVRFDTEVE LAYFNHGGIL PYVIRNLSKQ

Arabidopsis Description

ACO3Aconitate hydratase 3, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SIB9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.