Factsheet for PGSC0003DMT400022547

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 9
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

mitochondrion: 14983062

msms PMID: 14983062 doi

Y Balmer, WH Vensel, CK Tanaka, WJ Hurkman, E Gelhaye, N Rouhier, JP Jacquot, W Manieri, P Schürmann, M Droux, BB Buchanan

Department of Plant and Microbial Biology, University of California, 111 Koshland Hall, Berkeley, CA 94720, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g005860.1.1	Tomato	extracellular, plastid	97.45	97.45
PGSC0003DMT400074489	Potato	cytosol, extracellular	88.38	86.96
VIT_12s0059g02150.t01	Wine grape	plastid	85.73	85.21
KRH26786	Soybean	mitochondrion	85.42	85.16
KRH22567	Soybean	mitochondrion	85.22	84.96
KRH56130	Soybean	mitochondrion	84.3	84.47
AT2G05710.1	Thale cress	plastid	84.81	84.04
KRH25376	Soybean	mitochondrion	84.2	83.94
CDY18054	Canola	plastid	83.79	83.37
CDX97969	Canola	plastid	84.0	83.15
KRH15702	Soybean	mitochondrion	16.92	83.0
CDY50945	Canola	plastid	84.1	82.91
CDX93088	Canola	plastid	84.0	82.9
Bra019845.1-P	Field mustard	plastid	83.59	82.74
PGSC0003DMT400057191	Potato	plastid	76.86	79.79
CDY56501	Canola	plastid	78.19	78.83
Bra015165.1-P	Field mustard	plastid	68.09	65.75
PGSC0003DMT400003942	Potato	cytosol	4.59	23.94
PGSC0003DMT400003947	Potato	cytosol	4.59	23.94
PGSC0003DMT400035003	Potato	cytosol, plastid	12.33	23.77

Protein Annotations

KEGG:00020+4.2.1.3	KEGG:00290+4.2.1.33	KEGG:00630+4.2.1.3	KEGG:00720+4.2.1.3	Gene3D:1.10.1440.20	EntrezGene:102589351
MapMan:2.3.2	Gene3D:3.20.19.10	Gene3D:3.30.499.10	Gene3D:3.30.499.20	MapMan:5.7.3.6.2	InterPro:Acnase/IPM_dHydase_lsu_aba_1/3
InterPro:Acoase/IPM_deHydtase_lsu_aba	InterPro:Aconitase/3IPM_dehydase_swvl	InterPro:Aconitase/IRP2	InterPro:AconitaseA/IPMdHydase_ssu_swvl	InterPro:Aconitase_4Fe-4S_BS	InterPro:Aconitase_4Fe-4S_dom
ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0003994	GO:GO:0005488	GO:GO:0008150
GO:GO:0008152	GO:GO:0016829	GO:GO:0051536	GO:GO:0051539	InterPro:IPR015928	InterPro:IPR015931
UniProt:M1AGW8	PFAM:PF00330	PFAM:PF00694	EnsemblPlantsGene:PGSC0003DMG400008740	PGSC:PGSC0003DMG400008740	EnsemblPlants:PGSC0003DMT400022547
PRINTS:PR00415	ScanProsite:PS00450	ScanProsite:PS01244	PANTHER:PTHR11670	PANTHER:PTHR11670:SF50	SUPFAM:SSF52016
SUPFAM:SSF53732	TIGRFAMs:TIGR01341	UniParc:UPI000294FFCD	RefSeq:XP_006351962.1	SEG:seg	:

Description

Aconitase [Source:PGSC_GENE;Acc:PGSC0003DMG400008740]

Coordinates

chr12:+:6539902..6548287

Molecular Weight (calculated)

107165.0 Da

IEP (calculated)

6.877

GRAVY (calculated)

-0.171

Length

981 amino acids

Sequence
(BLAST)

001: MYVSSSIHIK PNFNSSFSVS KTLSKSSSAY CSSGYSSLGF SSTFRSPRWS YGVDWKSPIS LKAQIRTAAV TPVLNNFHRK LTTMASENPF KGILTSLPKP
101: GGGEFGKYYS LPALNDPRID KLPYSIRILL ESAIRNCDNF QVKKEDVEKI IDWENTSPKL AEIPFKPARV LLQDFTGVPA VVDLACMRDA MNKLGSNADK
201: INPLVPVDLV IDHSVQVDVA RSENAVQANM ELEFQRNKER FAFLKWGSNA FRNMLVVPPG SGIVHQVNLE YLGRVVFNRE GLLYPDSVVG TDSHTTMIDG
301: LGVAGWGVGG IEAEATMLGQ PMSMVLPGVV GFKLSGKLRS GVTATDLVLT VTQMLRKHGV VGKFVEFYGD GMGELSLADR ATIANMSPEY GATMGFFPVD
401: HVTLQYLKLT GRSDETVSMI EAYLRANNMF VDYNEPQHEK VYSSCLYLDL AEVEPCVSGP KRPHDRVPLK EMKSDWHSCL DNKVGFKGFA VPKDAQEKVV
501: KFSFHGQDAE LKHGSVVIAA ITSCTNTSNP SVMLGAALVA KKACDLGLNV KPWVKTSLAP GSGVVTKYLL QSGLQKYLNE QGFHIVGYGC TTCIGNSGDL
601: DESVSSAISE NDIVAAAVLS GNRNFEGRVH PLTRANYLAS PPLVVAYALA GTVDIDFEKE PIGVGKDGKN VFFRDIWPST EEIAEVVQSS VLPDMFKSTY
701: EAITKGNNMW NQLSVPATSL YSWEPSSTYI HEPPYFKDMT MDPPGPNGVK DAYCLLNFGD SITTDHISPA GSIHKDSPAA KYLNERGVDR RDFNSYGSRR
801: GNDEIMARGT FANIRIVNKL LNGEVGPKTI HIPSGEKLSV FDAAMKYKSA GQDTIILAGA EYGSGSSRDW AAKGPMLLGV KAVIAKSFER IHRSNLVGMG
901: IVPLCFKAGE DADSLGLTGH ERYTIDLPDN ISEIRPGQDV TVRTDTGKSF TCIVRFDTEV ELAYFNHGGI LPYVIRQLSQ Q

Best Arabidopsis Sequence Match ( AT2G05710.1 )
(BLAST)

001: MYLTASSSAS SSIIRAASSR SSSLFSFRSV LSPSVSSTSP SSLLARRSFG TISPAFRRWS HSFHSKPSPF RFTSQIRAVS PVLDRLQRTF SSMASEHPFK
101: GIFTTLPKPG GGEFGKFYSL PALNDPRVDK LPYSIRILLE SAIRNCDNFQ VTKEDVEKII DWEKTSPKQV EIPFKPARVL LQDFTGVPAV VDLACMRDAM
201: NKLGSDSNKI NPLVPVDLVI DHSVQVDVAR SENAVQANME LEFQRNKERF AFLKWGSTAF QNMLVVPPGS GIVHQVNLEY LGRVVFNTKG LLYPDSVVGT
301: DSHTTMIDGL GVAGWGVGGI EAEATMLGQP MSMVLPGVVG FKLAGKMRNG VTATDLVLTV TQMLRKHGVV GKFVEFYGNG MSGLSLADRA TIANMSPEYG
401: ATMGFFPVDH VTLQYLKLTG RSDETVAMIE AYLRANNMFV DYNEPQQDRV YSSYLELNLD DVEPCISGPK RPHDRVTLKE MKADWHSCLD SKVGFKGFAI
501: PKEAQEKVVN FSFDGQPAEL KHGSVVIAAI TSCTNTSNPS VMLGAGLVAK KACDLGLQVK PWIKTSLAPG SGVVTKYLLK SGLQEYLNEQ GFNIVGYGCT
601: TCIGNSGEIN ESVGAAITEN DIVAAAVLSG NRNFEGRVHP LTRANYLASP PLVVAYALAG TVNIDFETEP IGKGKNGKDV FLRDIWPTTE EIAEVVQSSV
701: LPDMFRATYE SITKGNPMWN KLSVPENTLY SWDPNSTYIH EPPYFKDMTM DPPGPHNVKD AYCLLNFGDS ITTDHISPAG NIQKDSPAAK FLMERGVDRK
801: DFNSYGSRRG NDEIMARGTF ANIRIVNKLM NGEVGPKTVH IPSGEKLSVF DAAMRYKSSG EDTIILAGAE YGSGSSRDWA AKGPMLQGVK AVIAKSFERI
901: HRSNLVGMGI IPLCFKSGED ADTLGLTGHE RYTIHLPTDI SEIRPGQDVT VTTDNGKSFT CTVRFDTEVE LAYFNHGGIL PYVIRNLSKQ

Arabidopsis Description

ACO3Aconitate hydratase 3, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SIB9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.