Factsheet for Solyc12g005860.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular

Predictor Summary:

plastid 9
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867
extracellular: 22364583
unclear: 26455813
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400022547	Potato	mitochondrion, plastid	97.45	97.45
Solyc07g052350.2.1	Tomato	plastid	88.18	86.93
VIT_12s0059g02150.t01	Wine grape	plastid	85.63	85.11
KRH22567	Soybean	mitochondrion	85.02	84.76
KRH26786	Soybean	mitochondrion	85.02	84.76
KRH56130	Soybean	mitochondrion	83.79	83.96
AT2G05710.1	Thale cress	plastid	84.4	83.64
KRH25376	Soybean	mitochondrion	83.69	83.44
CDY18054	Canola	plastid	83.59	83.16
KRH15702	Soybean	mitochondrion	16.92	83.0
CDX97969	Canola	plastid	83.49	82.64
CDY50945	Canola	plastid	83.59	82.41
CDX93088	Canola	plastid	83.49	82.39
Bra019845.1-P	Field mustard	plastid	83.08	82.24
CDY56501	Canola	plastid	77.98	78.62
Bra015165.1-P	Field mustard	plastid	67.89	65.55
Solyc03g005730.2.1	Tomato	plastid	12.33	23.77
Solyc09g090900.2.1	Tomato	plastid	12.13	23.56

Protein Annotations

KEGG:00020+4.2.1.3	KEGG:00290+4.2.1.33	KEGG:00630+4.2.1.3	KEGG:00720+4.2.1.3	Gene3D:1.10.1440.20	MapMan:2.3.2
Gene3D:3.20.19.10	Gene3D:3.30.499.10	Gene3D:3.30.499.20	MapMan:5.7.3.6.2	InterPro:Acnase/IPM_dHydase_lsu_aba_1/3	InterPro:Acoase/IPM_deHydtase_lsu_aba
InterPro:Aconitase/3IPM_dehydase_swvl	InterPro:Aconitase/IRP2	InterPro:AconitaseA/IPMdHydase_ssu_swvl	InterPro:Aconitase_4Fe-4S_BS	InterPro:Aconitase_4Fe-4S_dom	ncoils:Coil
GO:GO:0003674	GO:GO:0003824	GO:GO:0003994	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152
GO:GO:0016829	GO:GO:0051536	GO:GO:0051539	InterPro:IPR015928	InterPro:IPR015931	UniProt:K4DBC4
PFAM:PF00330	PFAM:PF00694	PRINTS:PR00415	ScanProsite:PS00450	ScanProsite:PS01244	PANTHER:PTHR11670
PANTHER:PTHR11670:SF50	SUPFAM:SSF52016	SUPFAM:SSF53732	EnsemblPlantsGene:Solyc12g005860.1	EnsemblPlants:Solyc12g005860.1.1	TIGRFAMs:TIGR01341
UniParc:UPI000276A4A7	SEG:seg	:	:	:	:

Description

Aconitate hydratase [Source:UniProtKB/TrEMBL;Acc:K4DBC4]

Coordinates

chr12:-:490745..498964

Molecular Weight (calculated)

107160.0 Da

IEP (calculated)

6.970

GRAVY (calculated)

-0.160

Length

981 amino acids

Sequence
(BLAST)

001: MYVSSSVHIK PNFFTSFPVS KSLSKSTGAY CSSGYSSLSF SSTFRSLRWR YGVDWKSPIS LTSQIRTAAV TPVLNNFRRK LTTMASGNPF KGILTSLPKP
101: GGGEFGKYYS LPALNDPRID KLPYSIRILL ESAIRNCDNF QVKKEDVEKI IDWENTSPKL AEIPFKPARV LLQDFTGVPA VVDLACMRDA MNKLGSNADK
201: INPLVPVDLV IDHSVQVDVA RSENAVQANM ELEFQRNKER FAFLKWGSNA FRNMLVVPPG SGIVHQVNLE YLGRVVFNRE GLLYPDSVVG TDSHTTMIDG
301: LGVAGWGVGG IEAEATMLGQ PMSMVLPGVV GFKLSGKLRS GVTATDLVLT VTQMLRKHGV VGKFVEFYGD GMGELSLADR ATIANMSPEY GATMGFFPVD
401: HVTLQYLKLT GRSDETVSMI EAYLRANNMF VDYNEPQHEK VYSSCLYLDL AEVEPCVSGP KRPHDRVPLK EMKSDWHSCL DNKVGFKGFA VPKDAQEKVV
501: KFSFHGQHAE LKHGSVVIAA ITSCTNTSNP SVMLGAALVA KKACDLGLNV KPWVKTSLAP GSGVVTKYLL QSGLQKYLNE QGFNIVGYGC TTCIGNSGDL
601: DESVSSAISE NDIVAAAVLS GNRNFEGRVH PLTRANYLAS PPLVVAYALA GTVDIDFDKE PIGVGKDGNS VYFRDIWPST EEIAEVVQSS VLPDMFKSTY
701: EAITKGNNMW NQLSVPATSL YSWDTSSTYI HEPPYFKDMT MDPPGPHGVK DAYCLLNFGD SITTDHISPA GSIHKDSPAA KYLNERGVDR RDFNSYGSRR
801: GNDEIMARGT FANIRIVNKL LNGEVGPKTI HIPSGEKLSV FDAAMKYKSA GQDTIILAGA EYGSGSSRDW AAKGPMLLGV KAVIAKSFER IHRSNLVGMG
901: IVPLCFKAGE DADSLGLTGH ERYTIDLPDN ISEIRPGQDV TVQTDTGKSF TCVVRFDTEV ELAYFNHGGI LPYVIRQLSQ Q

Best Arabidopsis Sequence Match ( AT2G05710.1 )
(BLAST)

001: MYLTASSSAS SSIIRAASSR SSSLFSFRSV LSPSVSSTSP SSLLARRSFG TISPAFRRWS HSFHSKPSPF RFTSQIRAVS PVLDRLQRTF SSMASEHPFK
101: GIFTTLPKPG GGEFGKFYSL PALNDPRVDK LPYSIRILLE SAIRNCDNFQ VTKEDVEKII DWEKTSPKQV EIPFKPARVL LQDFTGVPAV VDLACMRDAM
201: NKLGSDSNKI NPLVPVDLVI DHSVQVDVAR SENAVQANME LEFQRNKERF AFLKWGSTAF QNMLVVPPGS GIVHQVNLEY LGRVVFNTKG LLYPDSVVGT
301: DSHTTMIDGL GVAGWGVGGI EAEATMLGQP MSMVLPGVVG FKLAGKMRNG VTATDLVLTV TQMLRKHGVV GKFVEFYGNG MSGLSLADRA TIANMSPEYG
401: ATMGFFPVDH VTLQYLKLTG RSDETVAMIE AYLRANNMFV DYNEPQQDRV YSSYLELNLD DVEPCISGPK RPHDRVTLKE MKADWHSCLD SKVGFKGFAI
501: PKEAQEKVVN FSFDGQPAEL KHGSVVIAAI TSCTNTSNPS VMLGAGLVAK KACDLGLQVK PWIKTSLAPG SGVVTKYLLK SGLQEYLNEQ GFNIVGYGCT
601: TCIGNSGEIN ESVGAAITEN DIVAAAVLSG NRNFEGRVHP LTRANYLASP PLVVAYALAG TVNIDFETEP IGKGKNGKDV FLRDIWPTTE EIAEVVQSSV
701: LPDMFRATYE SITKGNPMWN KLSVPENTLY SWDPNSTYIH EPPYFKDMTM DPPGPHNVKD AYCLLNFGDS ITTDHISPAG NIQKDSPAAK FLMERGVDRK
801: DFNSYGSRRG NDEIMARGTF ANIRIVNKLM NGEVGPKTVH IPSGEKLSVF DAAMRYKSSG EDTIILAGAE YGSGSSRDWA AKGPMLQGVK AVIAKSFERI
901: HRSNLVGMGI IPLCFKSGED ADTLGLTGHE RYTIHLPTDI SEIRPGQDVT VTTDNGKSFT CTVRFDTEVE LAYFNHGGIL PYVIRNLSKQ

Arabidopsis Description

ACO3Aconitate hydratase 3, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SIB9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.