Factsheet for Solyc03g005730.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400035003	Potato	cytosol, plastid	99.41	99.41
VIT_08s0056g01640.t01	Wine grape	plastid	89.59	88.54
VIT_05s0049g01980.t01	Wine grape	plastid	87.62	87.8
GSMUA_Achr2P20910_001	Banana	plastid	71.71	83.72
EES06213	Sorghum	plastid	82.91	83.23
Zm00001d015088_P002	Maize	plastid	82.32	82.97
CDY56070	Canola	plastid	82.32	82.97
Bra040341.1-P	Field mustard	plastid	82.12	82.94
CDY43713	Canola	plastid	81.93	82.74
CDY47367	Canola	plastid	82.32	82.32
CDY01130	Canola	plastid	81.93	82.09
Bra032708.1-P	Field mustard	plastid	82.12	81.96
AT4G13430.1	Thale cress	plastid	81.73	81.73
Solyc09g090900.2.1	Tomato	plastid	80.94	81.58
TraesCS6B01G108100.2	Wheat	plastid	80.16	80.63
TraesCS6D01G074300.1	Wheat	plastid	80.75	80.59
TraesCS6A01G080600.1	Wheat	plastid	80.55	80.39
Zm00001d053960_P003	Maize	plastid	79.57	80.2
TraesCS2B01G181900.1	Wheat	plastid	78.78	80.04
Os02t0125100-01	Rice	plastid	80.35	79.57
KRG92248	Soybean	plastid	77.01	77.62
HORVU6Hr1G013950.5	Barley	plastid	79.96	76.5
GSMUA_Achr10P...	Banana	cytosol	34.38	74.47
Zm00001d053941_P001	Maize	cytosol	48.13	69.21
CDX87247	Canola	cytosol	16.7	59.86
Zm00001d053950_P001	Maize	cytosol	25.15	54.47
Solyc12g005860.1.1	Tomato	extracellular, plastid	23.77	12.33
Solyc07g052350.2.1	Tomato	plastid	22.79	11.66

Protein Annotations

KEGG:00290+4.2.1.33	Gene3D:3.30.499.10	Gene3D:3.30.499.20	MapMan:4.1.3.2.5.2.1	MapMan:9.5.1.3.1	InterPro:Acnase/IPM_dHydase_lsu_aba_1/3
InterPro:Acoase/IPM_deHydtase_lsu_aba	InterPro:Aconitase_4Fe-4S_dom	GO:GO:0003674	GO:GO:0003824	GO:GO:0003861	GO:GO:0005488
GO:GO:0008150	GO:GO:0008152	GO:GO:0008652	GO:GO:0009058	GO:GO:0009987	GO:GO:0016836
GO:GO:0051539	InterPro:Homoacnase/IPMdehydase_lsu	InterPro:IPMI_cat	InterPro:IPR015931	UniProt:K4BDZ7	PFAM:PF00330
PRINTS:PR00415	PANTHER:PTHR43822	SUPFAM:SSF53732	EnsemblPlantsGene:Solyc03g005730.2	EnsemblPlants:Solyc03g005730.2.1	TIGRFAMs:TIGR01343
UniParc:UPI000276926A	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr3:-:509260..517653

Molecular Weight (calculated)

55279.1 Da

IEP (calculated)

7.333

GRAVY (calculated)

-0.223

Length

509 amino acids

Sequence
(BLAST)

001: MAASSAIASS STTFINKKDV GLSAFSSQAS FSVQTARKRI SKRIVSVMTP QQTERKPATT GSVKTGMTMT EKILAKASDK PDVSPGDNVW VNVDVLMTHD
101: VCGPGSIGIF KKEFGQNAKV WDREKLVIIP DHYIFTTDER ANRNVDILRD FCNEQNIKYF YDIKDLGNFR ANPDYKGVCH VALAQEGHCR PGEVLLGTDS
201: HTCTAGAFGQ FATGIGNTDA GFVLGTGKIL LKVPPTLRFV MDGEMPDYLL AKDLILQIIG EISVAGATYK AMEFVGTTVE SLTMEERMTL CNMVVEAGGK
301: NGVIPADKTT YDYLEGRTSV PYEPVYSDEG ARYLKEYRFD VSKLEPLVAK PHSPDNRALA RECKDVKIDR VYIGSCTGGK TEDFMAAAKV FLASGKKVKV
401: PTFLVPATQK VWMDVYSLPV PGSGGKTCSQ IFEEAGCDTP ASPSCGACLG GPKDTYARMN EAQVCVSTTN RNFPGRMGHK EGQIYLASPY TAAASALTGY
501: VTDPREFLQ

Best Arabidopsis Sequence Match ( AT4G13430.1 )
(BLAST)

001: MASVISSSPF LCKSSSKSDL GISSFPKSSQ ISIHRCQKKS ISRKIVSVMA PQKDRSPGTT GSVKTGMTMT EKILARASEK SLVVPGDNIW VNVDVLMTHD
101: VCGPGAFGIF KREFGEKAKV WDPEKIVVIP DHYIFTADKR ANRNVDIMRE HCREQNIKYF YDITDLGNFK ANPDYKGVCH VALAQEGHCR PGEVLLGTDS
201: HTCTAGAFGQ FATGIGNTDA GFVLGTGKIL LKVPPTMRFI LDGEMPSYLQ AKDLILQIIG EISVAGATYK TMEFSGTTIE SLSMEERMTL CNMVVEAGGK
301: NGVIPPDATT LNYVENRTSV PFEPVYSDGN ASFVADYRFD VSKLEPVVAK PHSPDNRALA RECKDVKIDR VYIGSCTGGK TEDFMAAAKL FHAAGRKVKV
401: PTFLVPATQK VWMDVYALPV PGAGGKTCAQ IFEEAGCDTP ASPSCGACLG GPADTYARLN EPQVCVSTTN RNFPGRMGHK EGQIYLASPY TAAASALTGR
501: VADPREFLQ

Arabidopsis Description

IIL13-isopropylmalate dehydratase large subunit, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q94AR8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.