Factsheet for GSMUA_Achr2P20910_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 2
nucleus 1
plastid 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d015088_P002	Maize	plastid	85.55	73.86
EES06213	Sorghum	plastid	85.09	73.18
TraesCS6B01G108100.2	Wheat	plastid	84.86	73.12
TraesCS2B01G181900.1	Wheat	plastid	83.94	73.05
KRH17398	Soybean	nucleus	83.72	73.0
VIT_08s0056g01640.t01	Wine grape	plastid	86.01	72.82
TraesCS6D01G074300.1	Wheat	plastid	84.86	72.55
TraesCS6A01G080600.1	Wheat	plastid	84.63	72.35
VIT_05s0049g01980.t01	Wine grape	plastid	84.17	72.24
Zm00001d053960_P003	Maize	plastid	83.49	72.08
Os02t0125100-01	Rice	plastid	84.86	71.98
Solyc03g005730.2.1	Tomato	plastid	83.72	71.71
PGSC0003DMT400035003	Potato	cytosol, plastid	83.72	71.71
Bra040341.1-P	Field mustard	plastid	80.73	69.84
CDY56070	Canola	plastid	80.73	69.7
CDY43713	Canola	plastid	80.5	69.64
HORVU6Hr1G013950.5	Barley	plastid	84.63	69.36
CDY01130	Canola	plastid	80.5	69.09
AT4G13430.1	Thale cress	plastid	80.5	68.96
CDY47367	Canola	plastid	80.28	68.76
Bra032708.1-P	Field mustard	plastid	80.28	68.63
Solyc09g090900.2.1	Tomato	plastid	78.9	68.12
GSMUA_Achr10P...	Banana	cytosol	36.47	67.66
Zm00001d053941_P001	Maize	cytosol	54.82	67.51
KRG92248	Soybean	plastid	77.06	66.53
PGSC0003DMT400003942	Potato	cytosol	27.29	63.3
PGSC0003DMT400003947	Potato	cytosol	27.29	63.3
CDX87247	Canola	cytosol	19.04	58.45
Zm00001d053950_P001	Maize	cytosol	28.67	53.19
KRH05916	Soybean	plastid	84.17	38.27
GSMUA_Achr5P00710_001	Banana	plastid	21.79	9.57
GSMUA_Achr9P30280_001	Banana	plastid	21.33	9.27
GSMUA_Achr11P...	Banana	plastid	20.87	9.23
GSMUA_Achr11P...	Banana	plastid	20.87	9.09

Protein Annotations

KEGG:00290+4.2.1.33	Gene3D:3.30.499.10	Gene3D:3.30.499.20	MapMan:4.1.3.2.5.2.1	MapMan:9.5.1.3.1	InterPro:Acnase/IPM_dHydase_lsu_aba_1/3
InterPro:Acoase/IPM_deHydtase_lsu_aba	InterPro:Aconitase_4Fe-4S_dom	GO:GO:0003674	GO:GO:0003824	GO:GO:0003861	GO:GO:0008150
GO:GO:0008152	EnsemblPlantsGene:GSMUA_Achr2G20910_001	EnsemblPlants:GSMUA_Achr2P20910_001	EnsemblPlants:GSMUA_Achr2T20910_001	InterPro:IPMI_cat	InterPro:IPR015931
UniProt:M0S9T2	PFAM:PF00330	PRINTS:PR00415	PANTHER:PTHR43822	SUPFAM:SSF53732	UniParc:UPI000295109A
SEG:seg	:	:	:	:	:

Description

3-isopropylmalate dehydratase [Source:GMGC_GENE;Acc:GSMUA_Achr2G20910_001]

Coordinates

chr2:-:20584259..20593974

Molecular Weight (calculated)

47733.4 Da

IEP (calculated)

5.838

GRAVY (calculated)

-0.141

Length

436 amino acids

Sequence
(BLAST)

001: MAPARSPRSP SSTGSVKHAM TMTEKILARA SEKSHPEPGE NIWVNVDVLM THDICGPGTI GIFKKEFGQN AKVWDREKIV IIPDHYIFTS DERANRNVDI
101: LRDFCLEQNI KYFYDIKDLG DFRANPDYKG VCHIALAQEG HCRPGEVLLG TDSHTCTAGA FGQFATGIGN TDAGFVMGTG KILLKVPPTL RFILDGEMPN
201: YLLAKDLILQ IIGEITVAGA TYKSMEFVGS TIEGLNMEER MTLCNMVVEA GGKNGVVPAD ETTFKYLEDK TSKNFEPVYS DDNARFIQEY RIDVSKLEPL
301: VAKPHSPDNR ALARECKDVK IDRVYIGSCT GGKTEDFFAA AKVFLASGKK VKVPTFLVPA TQKVWMDIYS LLVPGSGGKT CSQIFEEAGC DVPASPSCGA
401: CLGGPHDTYA RMNEPQASYS GFMLHIGLLL EIIGFV

Best Arabidopsis Sequence Match ( AT4G13430.1 )
(BLAST)

001: MASVISSSPF LCKSSSKSDL GISSFPKSSQ ISIHRCQKKS ISRKIVSVMA PQKDRSPGTT GSVKTGMTMT EKILARASEK SLVVPGDNIW VNVDVLMTHD
101: VCGPGAFGIF KREFGEKAKV WDPEKIVVIP DHYIFTADKR ANRNVDIMRE HCREQNIKYF YDITDLGNFK ANPDYKGVCH VALAQEGHCR PGEVLLGTDS
201: HTCTAGAFGQ FATGIGNTDA GFVLGTGKIL LKVPPTMRFI LDGEMPSYLQ AKDLILQIIG EISVAGATYK TMEFSGTTIE SLSMEERMTL CNMVVEAGGK
301: NGVIPPDATT LNYVENRTSV PFEPVYSDGN ASFVADYRFD VSKLEPVVAK PHSPDNRALA RECKDVKIDR VYIGSCTGGK TEDFMAAAKL FHAAGRKVKV
401: PTFLVPATQK VWMDVYALPV PGAGGKTCAQ IFEEAGCDTP ASPSCGACLG GPADTYARLN EPQVCVSTTN RNFPGRMGHK EGQIYLASPY TAAASALTGR
501: VADPREFLQ

Arabidopsis Description

IIL13-isopropylmalate dehydratase large subunit, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q94AR8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.