Factsheet for PGSC0003DMT400035003

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 9
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

cytosol: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g005730.2.1	Tomato	plastid	99.41	99.41
VIT_08s0056g01640.t01	Wine grape	plastid	89.78	88.74
VIT_05s0049g01980.t01	Wine grape	plastid	88.21	88.39
PGSC0003DMT400003947	Potato	cytosol	31.24	84.57
PGSC0003DMT400003942	Potato	cytosol	31.24	84.57
GSMUA_Achr2P20910_001	Banana	plastid	71.71	83.72
CDY56070	Canola	plastid	82.71	83.37
Bra040341.1-P	Field mustard	plastid	82.51	83.33
CDY43713	Canola	plastid	82.32	83.13
EES06213	Sorghum	plastid	82.71	83.04
Zm00001d015088_P002	Maize	plastid	82.12	82.77
CDY47367	Canola	plastid	82.71	82.71
CDY01130	Canola	plastid	82.32	82.48
Bra032708.1-P	Field mustard	plastid	82.51	82.35
AT4G13430.1	Thale cress	plastid	82.12	82.12
TraesCS6B01G108100.2	Wheat	plastid	80.16	80.63
TraesCS6D01G074300.1	Wheat	plastid	80.75	80.59
TraesCS6A01G080600.1	Wheat	plastid	80.55	80.39
Zm00001d053960_P003	Maize	plastid	79.57	80.2
TraesCS2B01G181900.1	Wheat	plastid	78.59	79.84
Os02t0125100-01	Rice	plastid	80.35	79.57
KRG92248	Soybean	plastid	77.41	78.02
HORVU6Hr1G013950.5	Barley	plastid	80.16	76.69
GSMUA_Achr10P...	Banana	cytosol	34.38	74.47
Zm00001d053941_P001	Maize	cytosol	48.13	69.21
CDX87247	Canola	cytosol	16.7	59.86
Zm00001d053950_P001	Maize	cytosol	25.15	54.47
PGSC0003DMT400022547	Potato	mitochondrion, plastid	23.77	12.33
PGSC0003DMT400057191	Potato	plastid	22.0	11.85
PGSC0003DMT400074489	Potato	cytosol, extracellular	22.59	11.53

Protein Annotations

KEGG:00290+4.2.1.33	EntrezGene:102602969	Gene3D:3.30.499.10	Gene3D:3.30.499.20	MapMan:4.1.3.2.5.2.1	MapMan:9.5.1.3.1
InterPro:Acnase/IPM_dHydase_lsu_aba_1/3	InterPro:Acoase/IPM_deHydtase_lsu_aba	InterPro:Aconitase_4Fe-4S_dom	GO:GO:0003674	GO:GO:0003824	GO:GO:0003861
GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0008652	GO:GO:0009058	GO:GO:0009987
GO:GO:0016836	GO:GO:0051539	InterPro:Homoacnase/IPMdehydase_lsu	InterPro:IPMI_cat	InterPro:IPR015931	UniProt:M1B1N3
PFAM:PF00330	EnsemblPlantsGene:PGSC0003DMG400013459	PGSC:PGSC0003DMG400013459	EnsemblPlants:PGSC0003DMT400035003	PRINTS:PR00415	PANTHER:PTHR43822
SUPFAM:SSF53732	TIGRFAMs:TIGR01343	UniParc:UPI000296831F	RefSeq:XP_006356071.1	SEG:seg	:

Description

3-isopropylmalate dehydratase [Source:PGSC_GENE;Acc:PGSC0003DMG400013459]

Coordinates

chr3:-:711026..719480

Molecular Weight (calculated)

55237.0 Da

IEP (calculated)

7.333

GRAVY (calculated)

-0.222

Length

509 amino acids

Sequence
(BLAST)

001: MAASSAIASS STAFINKKDV GLSAFSSQSS FSVQTARKRI SKKIVSVMTP QQTERKPATT GSVKTGMTMT EKILAKASDK PDVSPGDNVW VNVDVLMTHD
101: VCGPGSIGIF KKEFGQNAKV WDREKLVIIP DHYIFTTDER ANRNVDILRD FCNEQNIKYF YDIKDLGNFR ANPDYKGVCH VALAQEGHCR PGEVLLGTDS
201: HTCTAGAFGQ FATGIGNTDA GFVLGTGKIL LKVPPTLRFV MDGEMPDYLL AKDLILQIIG EISVAGATYK AMEFVGTTVE SLTMEERMTL CNMVVEAGGK
301: NGVIPADKTT YDYLEGRTSV PYEPVYSDEG ARYLKEYRFD VSKLEPLVAK PHSPDNRALA RECKDVKIDR VYIGSCTGGK TEDFMAAAKV FLASGKKVKV
401: PTFLVPATQK VWMDVYSLPV PGSGGKTCSQ IFEEAGCDTP ASPSCGACLG GPKDTYARMN EAQVCVSTTN RNFPGRMGHK EGQIYLASPY TAAASALTGY
501: VTDPREFLQ

Best Arabidopsis Sequence Match ( AT4G13430.1 )
(BLAST)

001: MASVISSSPF LCKSSSKSDL GISSFPKSSQ ISIHRCQKKS ISRKIVSVMA PQKDRSPGTT GSVKTGMTMT EKILARASEK SLVVPGDNIW VNVDVLMTHD
101: VCGPGAFGIF KREFGEKAKV WDPEKIVVIP DHYIFTADKR ANRNVDIMRE HCREQNIKYF YDITDLGNFK ANPDYKGVCH VALAQEGHCR PGEVLLGTDS
201: HTCTAGAFGQ FATGIGNTDA GFVLGTGKIL LKVPPTMRFI LDGEMPSYLQ AKDLILQIIG EISVAGATYK TMEFSGTTIE SLSMEERMTL CNMVVEAGGK
301: NGVIPPDATT LNYVENRTSV PFEPVYSDGN ASFVADYRFD VSKLEPVVAK PHSPDNRALA RECKDVKIDR VYIGSCTGGK TEDFMAAAKL FHAAGRKVKV
401: PTFLVPATQK VWMDVYALPV PGAGGKTCAQ IFEEAGCDTP ASPSCGACLG GPADTYARLN EPQVCVSTTN RNFPGRMGHK EGQIYLASPY TAAASALTGR
501: VADPREFLQ

Arabidopsis Description

IIL13-isopropylmalate dehydratase large subunit, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q94AR8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.