CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra032708.1-P	Field mustard	plastid	99.41	99.02
CDY47367	Canola	plastid	98.62	98.43
CDY56070	Canola	plastid	95.47	96.04
CDY43713	Canola	plastid	95.28	96.03
AT4G13430.1	Thale cress	plastid	93.5	93.32
PGSC0003DMT400035003	Potato	cytosol, plastid	82.48	82.32
Solyc03g005730.2.1	Tomato	plastid	82.09	81.93
PGSC0003DMT400003947	Potato	cytosol	29.92	80.85
PGSC0003DMT400003942	Potato	cytosol	29.92	80.85
KRH17398	Soybean	nucleus	79.53	80.8
VIT_08s0056g01640.t01	Wine grape	plastid	81.89	80.78
VIT_05s0049g01980.t01	Wine grape	plastid	80.71	80.71
GSMUA_Achr2P20910_001	Banana	plastid	69.09	80.5
Zm00001d015088_P002	Maize	plastid	78.15	78.61
Zm00001d053960_P003	Maize	plastid	77.17	77.62
EES06213	Sorghum	plastid	77.36	77.51
TraesCS6B01G108100.2	Wheat	plastid	76.18	76.48
Solyc09g090900.2.1	Tomato	plastid	75.79	76.24
TraesCS6D01G074300.1	Wheat	plastid	76.18	75.88
TraesCS2B01G181900.1	Wheat	plastid	74.8	75.85
TraesCS6A01G080600.1	Wheat	plastid	75.98	75.69
KRG92248	Soybean	plastid	75.2	75.64
Os02t0125100-01	Rice	plastid	76.18	75.29
HORVU6Hr1G013950.5	Barley	plastid	76.18	72.74
GSMUA_Achr10P...	Banana	cytosol	32.48	70.21
Zm00001d053941_P001	Maize	cytosol	45.28	64.97
CDX87247	Canola	cytosol	17.91	64.08
Zm00001d053950_P001	Maize	cytosol	23.43	50.64
KRH05916	Soybean	plastid	80.12	42.44
CDX69174	Canola	cytosol	21.06	11.88
CDY41626	Canola	cytosol	20.87	11.71
CDY24823	Canola	cytosol	20.87	11.5
CDX75532	Canola	cytosol	20.87	11.46
CDY18054	Canola	plastid	21.85	11.26
CDY56501	Canola	plastid	21.46	11.2
CDY14291	Canola	mitochondrion, plastid	21.85	11.16
CDY66424	Canola	mitochondrion	21.85	11.16
CDX91508	Canola	cytosol	1.77	10.98
CDX97969	Canola	plastid	21.26	10.9
CDX93088	Canola	plastid	21.26	10.87
CDY50945	Canola	plastid	21.26	10.85
CDY44621	Canola	cytosol	1.77	9.09
CDY19879	Canola	mitochondrion	0.39	2.33

Protein Annotations

KEGG:00290+4.2.1.33	Gene3D:3.30.499.10	Gene3D:3.30.499.20	MapMan:4.1.3.2.5.2.1	MapMan:9.5.1.3.1	GO:A0A078EGE6
InterPro:Acnase/IPM_dHydase_lsu_aba_1/3	InterPro:Acoase/IPM_deHydtase_lsu_aba	InterPro:Aconitase_4Fe-4S_dom	EnsemblPlants:CDY01130	ProteinID:CDY01130	ProteinID:CDY01130.1
ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0003861	GO:GO:0005488	GO:GO:0008150
GO:GO:0008152	GO:GO:0008652	GO:GO:0009058	GO:GO:0009987	GO:GO:0016836	GO:GO:0051539
EnsemblPlantsGene:GSBRNA2T00111198001	InterPro:Homoacnase/IPMdehydase_lsu	InterPro:IPMI_cat	InterPro:IPR015931	PFAM:PF00330	PRINTS:PR00415
PANTHER:PTHR43822	SUPFAM:SSF53732	TIGRFAMs:TIGR01343	UniPathway:UPA00048	UniParc:UPI0001890C42	:

Description

BnaA04g06890D

Coordinates

chrLK031924:-:346517..350078

Molecular Weight (calculated)

54897.7 Da

IEP (calculated)

7.598

GRAVY (calculated)

-0.168

Length

508 amino acids

Sequence
(BLAST)

001: MASSVISSSP FVCKSPAKKD LGVSSFRKAS QISIHGCQRK SISRKIVSVM APQRSSSTSG SVKTGMTMTE KILAKAAEKS QVVPGDNIWV NVDVLMTHDV
101: CGPGAFGIFK REFGDNAKVW DSEKIVVIPD HYIFTSDKRA NRNVDIMREH CREQNIKYFY DITDLGDFRA NPDYKGVCHV ALAQEGHCRP GEVLLGTDSH
201: TCTAGAFGQF ATGIGNTDAG FVLGTGKILL KVPPTMRFIL DGEMPSYLQA KDLILQIIGE ISVAGATYKT MEFSGTTIES LTMEERMTLC NMVVEAGGKN
301: GVIPPDATTF NYVENRTSVP FQPVYSDANA SFVADYRFDV SKLEPVVAKP HSPDNRALAR ECKDVKIDRV YIGSCTGGKT EDFMAAAKLF HAAGKQVKVP
401: TFLVPATQKV WMDVYALPVP GAGGKTCAQI FEEAGCDTPT SPSCGACLGG PADTYARLNE PQVCVSTTNR NFPGRMGHKE GQIYLASPYT AAASALTGHV
501: TDPREFLQ

Best Arabidopsis Sequence Match ( AT4G13430.1 )
(BLAST)

001: MASVISSSPF LCKSSSKSDL GISSFPKSSQ ISIHRCQKKS ISRKIVSVMA PQKDRSPGTT GSVKTGMTMT EKILARASEK SLVVPGDNIW VNVDVLMTHD
101: VCGPGAFGIF KREFGEKAKV WDPEKIVVIP DHYIFTADKR ANRNVDIMRE HCREQNIKYF YDITDLGNFK ANPDYKGVCH VALAQEGHCR PGEVLLGTDS
201: HTCTAGAFGQ FATGIGNTDA GFVLGTGKIL LKVPPTMRFI LDGEMPSYLQ AKDLILQIIG EISVAGATYK TMEFSGTTIE SLSMEERMTL CNMVVEAGGK
301: NGVIPPDATT LNYVENRTSV PFEPVYSDGN ASFVADYRFD VSKLEPVVAK PHSPDNRALA RECKDVKIDR VYIGSCTGGK TEDFMAAAKL FHAAGRKVKV
401: PTFLVPATQK VWMDVYALPV PGAGGKTCAQ IFEEAGCDTP ASPSCGACLG GPADTYARLN EPQVCVSTTN RNFPGRMGHK EGQIYLASPY TAAASALTGR
501: VADPREFLQ

Arabidopsis Description

IIL13-isopropylmalate dehydratase large subunit, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q94AR8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.