Factsheet for Solyc09g090900.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
nucleus 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400003947	Potato	cytosol	34.85	93.62
PGSC0003DMT400003942	Potato	cytosol	34.85	93.62
Solyc03g005730.2.1	Tomato	plastid	81.58	80.94
VIT_05s0049g01980.t01	Wine grape	plastid	79.6	79.13
GSMUA_Achr2P20910_001	Banana	plastid	68.12	78.9
VIT_08s0056g01640.t01	Wine grape	plastid	80.2	78.64
EES06213	Sorghum	plastid	77.82	77.51
Bra040341.1-P	Field mustard	plastid	76.24	76.39
Zm00001d053960_P003	Maize	plastid	76.24	76.24
Zm00001d015088_P002	Maize	plastid	76.24	76.24
CDY43713	Canola	plastid	76.04	76.19
TraesCS2B01G181900.1	Wheat	plastid	75.45	76.05
CDY56070	Canola	plastid	76.04	76.04
AT4G13430.1	Thale cress	plastid	76.44	75.83
CDY01130	Canola	plastid	76.24	75.79
TraesCS6B01G108100.2	Wheat	plastid	75.84	75.69
CDY47367	Canola	plastid	76.24	75.64
TraesCS6A01G080600.1	Wheat	plastid	76.24	75.49
TraesCS6D01G074300.1	Wheat	plastid	76.24	75.49
Bra032708.1-P	Field mustard	plastid	76.24	75.49
Os02t0125100-01	Rice	plastid	76.83	75.49
KRG92248	Soybean	plastid	75.05	75.05
HORVU6Hr1G013950.5	Barley	plastid	76.24	72.37
GSMUA_Achr10P...	Banana	cytosol	33.47	71.91
Zm00001d053941_P001	Maize	cytosol	44.55	63.56
CDX87247	Canola	cytosol	16.44	58.45
Zm00001d053950_P001	Maize	cytosol	23.17	49.79
Solyc12g005860.1.1	Tomato	extracellular, plastid	23.56	12.13
Solyc07g052350.2.1	Tomato	plastid	23.76	12.06

Protein Annotations

KEGG:00290+4.2.1.33	Gene3D:3.30.499.10	Gene3D:3.30.499.20	MapMan:4.1.3.2.5.2.1	MapMan:9.5.1.3.1	InterPro:Acnase/IPM_dHydase_lsu_aba_1/3
InterPro:Acoase/IPM_deHydtase_lsu_aba	InterPro:Aconitase_4Fe-4S_dom	GO:GO:0003674	GO:GO:0003824	GO:GO:0003861	GO:GO:0005488
GO:GO:0008150	GO:GO:0008152	GO:GO:0008652	GO:GO:0009058	GO:GO:0009987	GO:GO:0016836
GO:GO:0051539	InterPro:Homoacnase/IPMdehydase_lsu	InterPro:IPMI_cat	InterPro:IPR015931	UniProt:K4CWB6	PFAM:PF00330
PRINTS:PR00415	PANTHER:PTHR43822	SUPFAM:SSF53732	EnsemblPlantsGene:Solyc09g090900.2	EnsemblPlants:Solyc09g090900.2.1	TIGRFAMs:TIGR01343
UniParc:UPI000276B19B	SEG:seg	:	:	:	:

Description

3-isopropylmalate dehydratase large subunit, chloroplastic [Source:Projected from Arabidopsis thaliana (AT4G13430) UniProtKB/Swiss-Prot;Acc:Q94AR8]

Coordinates

chr9:+:70308264..70313045

Molecular Weight (calculated)

55391.2 Da

IEP (calculated)

7.046

GRAVY (calculated)

-0.221

Length

505 amino acids

Sequence
(BLAST)

001: MASFSTSSTY CLSKNVVFLS DFSPLNQFPT QSPRRRFSKK IVSMITQPSS RMPATTGSVK SWMTMTEKLL ARTSEKLHVV PGENLWVNVD VLMTNDITGP
101: GAIGVFKREF GENAKVWDRE KVVVIPDHYI FTADERANRN VDTLRDFCNE QNIKYYYDIK DLGNFQANPD YKGVCHIALA QEGHCRPGEV LVGTDSHTCT
201: AGAFGQFASG IGNTDAGFVL GTGKILLKVP PTIRFVLDGE IPNYILAKDL ILQVIGEISV AGATYKTMEF VGTAVESLTM EERMTLCNMV IEAGGKNGVI
301: PADKTTYDYL KDKTTVHYEP VYSDEQARFL AKYHFDISKL EPLVAKPHSP GNRALARECE DVKIDRVYIG SCTGGKTEDF MAAAKVFLAS GKKVKVPTFL
401: VPATQKVWMD LYTIPVPESG GKTCSQIFED AGCDTPASPS CGACMGGPRD THARLNEPQV CVSTTNRNFP GRMGHKEGQI YLASPYTAAA SALTGHVTDP
501: RDFLQ

Best Arabidopsis Sequence Match ( AT4G13430.1 )
(BLAST)

001: MASVISSSPF LCKSSSKSDL GISSFPKSSQ ISIHRCQKKS ISRKIVSVMA PQKDRSPGTT GSVKTGMTMT EKILARASEK SLVVPGDNIW VNVDVLMTHD
101: VCGPGAFGIF KREFGEKAKV WDPEKIVVIP DHYIFTADKR ANRNVDIMRE HCREQNIKYF YDITDLGNFK ANPDYKGVCH VALAQEGHCR PGEVLLGTDS
201: HTCTAGAFGQ FATGIGNTDA GFVLGTGKIL LKVPPTMRFI LDGEMPSYLQ AKDLILQIIG EISVAGATYK TMEFSGTTIE SLSMEERMTL CNMVVEAGGK
301: NGVIPPDATT LNYVENRTSV PFEPVYSDGN ASFVADYRFD VSKLEPVVAK PHSPDNRALA RECKDVKIDR VYIGSCTGGK TEDFMAAAKL FHAAGRKVKV
401: PTFLVPATQK VWMDVYALPV PGAGGKTCAQ IFEEAGCDTP ASPSCGACLG GPADTYARLN EPQVCVSTTN RNFPGRMGHK EGQIYLASPY TAAASALTGR
501: VADPREFLQ

Arabidopsis Description

IIL13-isopropylmalate dehydratase large subunit, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q94AR8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.