CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 7
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
mitochondrion: 21766870
mitochondrion: 27780359

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 21766870 doi

S Komatsu, A Yamamoto, T Nakamura, MZ Nouri, Y Nanjo, K Nishizawa, K Furukawa

National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH25376	Soybean	mitochondrion	95.91	95.43
KRH22567	Soybean	mitochondrion	90.7	90.24
KRH26786	Soybean	mitochondrion	90.5	90.04
VIT_12s0059g02150.t01	Wine grape	plastid	86.11	85.41
KRH74952	Soybean	cytosol	8.07	84.95
KRH76600	Soybean	endoplasmic reticulum	78.14	84.91
KRH28848	Soybean	cytosol, nucleus	78.14	84.91
Solyc07g052350.2.1	Tomato	plastid	85.8	84.42
PGSC0003DMT400022547	Potato	mitochondrion, plastid	84.47	84.3
Solyc12g005860.1.1	Tomato	extracellular, plastid	83.96	83.79
PGSC0003DMT400074489	Potato	cytosol, extracellular	85.19	83.65
AT2G05710.1	Thale cress	plastid	84.58	83.64
CDX97969	Canola	plastid	84.37	83.35
CDY50945	Canola	plastid	84.47	83.12
CDX93088	Canola	plastid	84.37	83.1
KRH15702	Soybean	mitochondrion	16.96	83.0
CDY18054	Canola	plastid	83.55	82.96
Bra019845.1-P	Field mustard	plastid	83.96	82.95
CDY56501	Canola	plastid	78.86	79.34
KRH26402	Soybean	cytosol, endoplasmic reticulum, plasma membrane	15.83	72.09
KRH30182	Soybean	cytosol	6.74	70.21
Bra015165.1-P	Field mustard	plastid	67.82	65.35
KRG94138	Soybean	cytosol	5.01	59.76
KRG89642	Soybean	cytosol	4.9	58.54
KRH66899	Soybean	cytosol	4.8	39.83
KRG92248	Soybean	plastid	12.36	23.96
KRH17398	Soybean	nucleus	11.75	23.0
KRH06959	Soybean	cytosol, mitochondrion, peroxisome, plastid	7.35	17.1
KRH54854	Soybean	cytosol	2.45	17.02
KRH05916	Soybean	plastid	11.95	12.2

Protein Annotations

KEGG:00020+4.2.1.3	KEGG:00290+4.2.1.33	KEGG:00630+4.2.1.3	KEGG:00720+4.2.1.3	Gene3D:1.10.1440.20	EntrezGene:100793264
MapMan:2.3.2	Gene3D:3.20.19.10	Gene3D:3.30.499.10	Gene3D:3.30.499.20	MapMan:5.7.3.6.2	EMBL:ACUP02004100
InterPro:Acnase/IPM_dHydase_lsu_aba_1/3	InterPro:Acoase/IPM_deHydtase_lsu_aba	InterPro:Aconitase/3IPM_dehydase_swvl	InterPro:Aconitase/IRP2	InterPro:AconitaseA/IPMdHydase_ssu_swvl	InterPro:Aconitase_4Fe-4S_BS
InterPro:Aconitase_4Fe-4S_dom	ncoils:Coil	EnsemblPlantsGene:GLYMA_06G305700	GO:GO:0003674	GO:GO:0003824	GO:GO:0003994
GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0016829	GO:GO:0051536	GO:GO:0051539
InterPro:IPR015928	InterPro:IPR015931	UniProt:K7KYB1	EnsemblPlants:KRH56130	ProteinID:KRH56130	ProteinID:KRH56130.1
PFAM:PF00330	PFAM:PF00694	PRINTS:PR00415	ScanProsite:PS00450	ScanProsite:PS01244	PANTHER:PTHR11670
PANTHER:PTHR11670:SF50	SUPFAM:SSF52016	SUPFAM:SSF53732	TIGRFAMs:TIGR01341	UniParc:UPI000233A774	SEG:seg

Description

hypothetical protein

Coordinates

chr6:-:49451178..49461046

Molecular Weight (calculated)

106957.0 Da

IEP (calculated)

7.044

GRAVY (calculated)

-0.172

Length

979 amino acids

Sequence
(BLAST)

001: MYITTVSSLL RATRPKLFFP SPSPSRTFAS RTSSFSAAPS LLRCSVPRWS HRLHSTSPLS PRPPITAVAP VVERFHRQIA TMANENPFKG NLTSLPKPGG
101: GEFGKFYSLP SLNDPRIDRL PYSIRILLES AIRNCDNFQV KKEDVEKILD WENNSTKQVE IPFKPARVLL QDFTGVPAVV DLACMRDAMN KLGSDSNKIN
201: PLVPVDLVID HSVQVDVTRS DNAVQANMEL EFQRNKERFA FLKWGSTAFL NMLVVPPGSG IVHQVNLEYL GRVVFNNEGL LYPDSVVGTD SHTTMIDGLG
301: VAGWGVGGIE AEAAMLGQPL SMVLPGVVGF KLSGKLHNGV TATDLVLTVT QILRKHGVVG KFVEFYGDGM GELSLADRAT IANMSPEYGA TMGFFPVDHV
401: TLQYLKLTGR SDETVAMIES YLRANKLFVD YNEPQQDRVY SSYLELNLSD VEPCISGPKR PHDRVPLKEM KADWHACLDN KVGFKGFAIP KEAQGKVAKF
501: DFHGQPAELK HGSVVIAAIT SCTNTSNPSV MLGAGLVAKK AHELGLKVKP WVKTSLAPGS GVVTKYLLQS GLQKYLNEQG FHIVGFGCTT CIGNSGELDE
601: SVASAISEND VVAAAVLSGN RNFEGRVHAL TRANYLASPP LVVAYALAGT VDIDFEKEPI GTGKDGKNVY LGDIWPSTEE IAEVVQSSVL PDMFRSTYEA
701: ITKGNPMWNQ LQVPADALYS WDPNSTYIHE PPYFKNMTMD PPGPHGVKDA YCLLNFGDSI TTDHISPAGS IHKDSPAAKY LVERGVERKD FNSYGSRRGN
801: DEVMARGTFA NIRLVNKLLK GEVGPKTVHI PTGEKLYVFD AATRYMASGQ DTIVLAGAEY GSGSSRDWAA KGPMLLGVKA VIAKSFERIH RSNLVGMGII
901: PLCFKPGEDA DTLGLTGHER YSIDLPSKIS EIRPGQDVTV TTDNGKSFTC TVRFDTEVEL DYFNHGGILP YVIRNLIKQ

Best Arabidopsis Sequence Match ( AT2G05710.1 )
(BLAST)

001: MYLTASSSAS SSIIRAASSR SSSLFSFRSV LSPSVSSTSP SSLLARRSFG TISPAFRRWS HSFHSKPSPF RFTSQIRAVS PVLDRLQRTF SSMASEHPFK
101: GIFTTLPKPG GGEFGKFYSL PALNDPRVDK LPYSIRILLE SAIRNCDNFQ VTKEDVEKII DWEKTSPKQV EIPFKPARVL LQDFTGVPAV VDLACMRDAM
201: NKLGSDSNKI NPLVPVDLVI DHSVQVDVAR SENAVQANME LEFQRNKERF AFLKWGSTAF QNMLVVPPGS GIVHQVNLEY LGRVVFNTKG LLYPDSVVGT
301: DSHTTMIDGL GVAGWGVGGI EAEATMLGQP MSMVLPGVVG FKLAGKMRNG VTATDLVLTV TQMLRKHGVV GKFVEFYGNG MSGLSLADRA TIANMSPEYG
401: ATMGFFPVDH VTLQYLKLTG RSDETVAMIE AYLRANNMFV DYNEPQQDRV YSSYLELNLD DVEPCISGPK RPHDRVTLKE MKADWHSCLD SKVGFKGFAI
501: PKEAQEKVVN FSFDGQPAEL KHGSVVIAAI TSCTNTSNPS VMLGAGLVAK KACDLGLQVK PWIKTSLAPG SGVVTKYLLK SGLQEYLNEQ GFNIVGYGCT
601: TCIGNSGEIN ESVGAAITEN DIVAAAVLSG NRNFEGRVHP LTRANYLASP PLVVAYALAG TVNIDFETEP IGKGKNGKDV FLRDIWPTTE EIAEVVQSSV
701: LPDMFRATYE SITKGNPMWN KLSVPENTLY SWDPNSTYIH EPPYFKDMTM DPPGPHNVKD AYCLLNFGDS ITTDHISPAG NIQKDSPAAK FLMERGVDRK
801: DFNSYGSRRG NDEIMARGTF ANIRIVNKLM NGEVGPKTVH IPSGEKLSVF DAAMRYKSSG EDTIILAGAE YGSGSSRDWA AKGPMLQGVK AVIAKSFERI
901: HRSNLVGMGI IPLCFKSGED ADTLGLTGHE RYTIHLPTDI SEIRPGQDVT VTTDNGKSFT CTVRFDTEVE LAYFNHGGIL PYVIRNLSKQ

Arabidopsis Description

ACO3Aconitate hydratase 3, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SIB9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.