CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 6
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
mitochondrion: 27780359
mitochondrion: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH26786	Soybean	mitochondrion	98.37	98.37
KRH56130	Soybean	mitochondrion	90.24	90.7
KRH25376	Soybean	mitochondrion	90.04	90.04
KRH74952	Soybean	cytosol	8.23	87.1
KRH15702	Soybean	mitochondrion	17.48	86.0
VIT_12s0059g02150.t01	Wine grape	plastid	85.67	85.41
PGSC0003DMT400022547	Potato	mitochondrion, plastid	84.96	85.22
KRH76600	Soybean	endoplasmic reticulum	77.85	85.02
KRH28848	Soybean	cytosol, nucleus	77.85	85.02
Solyc12g005860.1.1	Tomato	extracellular, plastid	84.76	85.02
Solyc07g052350.2.1	Tomato	plastid	85.87	84.92
PGSC0003DMT400074489	Potato	cytosol, extracellular	85.37	84.25
CDX97969	Canola	plastid	84.65	84.06
AT2G05710.1	Thale cress	plastid	84.45	83.94
CDY50945	Canola	plastid	84.76	83.82
CDY18054	Canola	plastid	83.94	83.77
CDX93088	Canola	plastid	84.55	83.7
Bra019845.1-P	Field mustard	plastid	84.25	83.65
CDY56501	Canola	plastid	78.76	79.65
KRH30182	Soybean	cytosol	6.91	72.34
KRH26402	Soybean	cytosol, endoplasmic reticulum, plasma membrane	15.35	70.23
Bra015165.1-P	Field mustard	plastid	68.29	66.14
KRG94138	Soybean	cytosol	4.98	59.76
KRG89642	Soybean	cytosol	4.88	58.54
KRH66899	Soybean	cytosol	4.57	38.14
KRG92248	Soybean	plastid	11.89	23.17
KRH17398	Soybean	nucleus	11.28	22.2
KRH06959	Soybean	cytosol, mitochondrion, peroxisome, plastid	7.32	17.1
KRH54854	Soybean	cytosol	2.44	17.02
KRH05916	Soybean	plastid	11.48	11.78

Protein Annotations

KEGG:00020+4.2.1.3	KEGG:00290+4.2.1.33	KEGG:00630+4.2.1.3	KEGG:00720+4.2.1.3	Gene3D:1.10.1440.20	EntrezGene:100810088
MapMan:2.3.2	Gene3D:3.20.19.10	Gene3D:3.30.499.10	Gene3D:3.30.499.20	MapMan:5.7.3.6.2	EMBL:ACUP02008422
InterPro:Acnase/IPM_dHydase_lsu_aba_1/3	InterPro:Acoase/IPM_deHydtase_lsu_aba	InterPro:Aconitase/3IPM_dehydase_swvl	InterPro:Aconitase/IRP2	InterPro:AconitaseA/IPMdHydase_ssu_swvl	InterPro:Aconitase_4Fe-4S_BS
InterPro:Aconitase_4Fe-4S_dom	ncoils:Coil	EnsemblPlantsGene:GLYMA_13G308700	GO:GO:0003674	GO:GO:0003824	GO:GO:0003994
GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0016829	GO:GO:0051536	GO:GO:0051539
UniProt:I1M442	InterPro:IPR015928	InterPro:IPR015931	EnsemblPlants:KRH22567	ProteinID:KRH22567	ProteinID:KRH22567.1
PFAM:PF00330	PFAM:PF00694	PRINTS:PR00415	ScanProsite:PS00450	ScanProsite:PS01244	PANTHER:PTHR11670
PANTHER:PTHR11670:SF50	SUPFAM:SSF52016	SUPFAM:SSF53732	TIGRFAMs:TIGR01341	UniParc:UPI000233BF32	SEG:seg

Description

hypothetical protein

Coordinates

chr13:-:40427362..40435226

Molecular Weight (calculated)

107116.0 Da

IEP (calculated)

7.616

GRAVY (calculated)

-0.196

Length

984 amino acids

Sequence
(BLAST)

001: MASTVSSILR ASRSKLSSSS SASLSRTLAR SAPRRSPGSS SAATRSFGSA VPRWSHGVDW RSPLGLRPQI RAAAPLIERF HRRIATSATD NPFKGNLTSL
101: PKPGGGEFGK FYSLPSLNDP RIDRLPYSIR ILLESAIRNC DNFQVKKEDV EKIIDWENSS VKQVEIPFKP ARVLLQDFTG VPAVVDLACM RDAMNKLGSD
201: SNKINPLVPV DLVIDHSVQV DVARSENAVQ ANMELEFQRN KERFAFLKWG SNAFRNMLVV PPGSGIVHQV NLEYLGRVVF NTEGLLYPDS VVGTDSHTTM
301: IDGLGVAGWG VGGIEAEAAM LGQPMSMVLP GVVGFKLSGK LRNGVTATDL VLTVTQILRK HGVVGKFVEF YGDGMGELSL ADRATIANMS PEYGATMGFF
401: PVDHVTLQYL KLTGRSDETV AMIEAYLRAN KLFIDYNEPQ PDRVYSSYLE LNLDEVEPCI SGPKRPHDRV PLKEMKADWH ACLDNNVGFK GFAIPKDVQG
501: KVAKFDFHGQ PAELKHGSVV IAAITSCTNT SNPSVMLGAG LVAKKAHELG LQVKPWVKTS LAPGSGVVTK YLLKSGLQKY LNEQGFNIVG FGCTTCIGNS
601: GELDQSVASA ISENDIVAAA VLSGNRNFEG RVHPLTRANY LASPPLVVAY ALAGTVDIDF EKEPIGTGKD GNNVYLRDIW PSTQEIAEAV QSSVLPDMFR
701: STYEAITKGN TMWNQLQVPA ETLYSWDPKS TYIHEPPYFK GMTMDPPGAH GVKDAYCLLN FGDSITTDHI SPAGNINKDS PAAKYLLDRG VEQKDFNSYG
801: SRRGNDEVMA RGTFANIRLV NKLLNGEVGP KTVHIPTGEK LYVFDAAQRY KAEGQDTIVL AGAEYGSGSS RDWAAKGPML LGVKAVIAKS FERIHRSNLV
901: GMGIVPLCFK SGEDADTLGL TGHERYTIDL PSNISEIRPG QDVTVTTNTG KSFTCTVRFD TEVELAYFNN GGILPYVIRN LIKQ

Best Arabidopsis Sequence Match ( AT2G05710.1 )
(BLAST)

001: MYLTASSSAS SSIIRAASSR SSSLFSFRSV LSPSVSSTSP SSLLARRSFG TISPAFRRWS HSFHSKPSPF RFTSQIRAVS PVLDRLQRTF SSMASEHPFK
101: GIFTTLPKPG GGEFGKFYSL PALNDPRVDK LPYSIRILLE SAIRNCDNFQ VTKEDVEKII DWEKTSPKQV EIPFKPARVL LQDFTGVPAV VDLACMRDAM
201: NKLGSDSNKI NPLVPVDLVI DHSVQVDVAR SENAVQANME LEFQRNKERF AFLKWGSTAF QNMLVVPPGS GIVHQVNLEY LGRVVFNTKG LLYPDSVVGT
301: DSHTTMIDGL GVAGWGVGGI EAEATMLGQP MSMVLPGVVG FKLAGKMRNG VTATDLVLTV TQMLRKHGVV GKFVEFYGNG MSGLSLADRA TIANMSPEYG
401: ATMGFFPVDH VTLQYLKLTG RSDETVAMIE AYLRANNMFV DYNEPQQDRV YSSYLELNLD DVEPCISGPK RPHDRVTLKE MKADWHSCLD SKVGFKGFAI
501: PKEAQEKVVN FSFDGQPAEL KHGSVVIAAI TSCTNTSNPS VMLGAGLVAK KACDLGLQVK PWIKTSLAPG SGVVTKYLLK SGLQEYLNEQ GFNIVGYGCT
601: TCIGNSGEIN ESVGAAITEN DIVAAAVLSG NRNFEGRVHP LTRANYLASP PLVVAYALAG TVNIDFETEP IGKGKNGKDV FLRDIWPTTE EIAEVVQSSV
701: LPDMFRATYE SITKGNPMWN KLSVPENTLY SWDPNSTYIH EPPYFKDMTM DPPGPHNVKD AYCLLNFGDS ITTDHISPAG NIQKDSPAAK FLMERGVDRK
801: DFNSYGSRRG NDEIMARGTF ANIRIVNKLM NGEVGPKTVH IPSGEKLSVF DAAMRYKSSG EDTIILAGAE YGSGSSRDWA AKGPMLQGVK AVIAKSFERI
901: HRSNLVGMGI IPLCFKSGED ADTLGLTGHE RYTIHLPTDI SEIRPGQDVT VTTDNGKSFT CTVRFDTEVE LAYFNHGGIL PYVIRNLSKQ

Arabidopsis Description

ACO3Aconitate hydratase 3, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SIB9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.