Factsheet for TraesCS5A01G505000.2

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

plastid 5
mitochondrion 3

Predictors

GFP

MS/MS

Papers

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU4Hr1G080640.1	Barley	mitochondrion	92.06	98.92
TraesCS4B01G335100.1	Wheat	endoplasmic reticulum	78.69	98.0
Os03t0136900-01	Rice	mitochondrion	89.65	90.47
EER92899	Sorghum	plastid	89.15	89.51
Zm00001d048358_P002	Maize	plastid	88.84	89.38
Zm00001d027558_P003	Maize	plastid	89.05	86.52
Bra011642.1-P	Field mustard	cytosol	75.48	83.63
Bra010508.1-P	Field mustard	cytosol	75.38	83.52
CDX69174	Canola	cytosol	75.58	83.46
AT4G35830.1	Thale cress	cytosol	75.08	83.18
VIT_00s0264g00030.t01	Wine grape	mitochondrion	76.58	83.01
KRH28848	Soybean	cytosol, nucleus	75.08	82.91
KRH76600	Soybean	endoplasmic reticulum	74.87	82.69
CDY41626	Canola	cytosol	75.08	82.54
GSMUA_Achr11P...	Banana	plastid	81.51	82.25
CDX75532	Canola	cytosol	75.98	81.73
CDY24823	Canola	cytosol	75.38	81.34
TraesCS6A01G400000.1	Wheat	golgi	78.59	80.12
CDX91508	Canola	cytosol	6.33	76.83
GSMUA_Achr11P...	Banana	plastid	76.48	76.02
TraesCS7A01G219100.1	Wheat	golgi, unclear	64.72	71.24
CDY44621	Canola	cytosol	6.83	68.69
TraesCS3A01G184000.1	Wheat	plastid	65.63	64.85
TraesCS6A01G080600.1	Wheat	plastid	11.26	21.96

Protein Annotations

KEGG:00020+4.2.1.3	KEGG:00290+4.2.1.33	KEGG:00630+4.2.1.3	KEGG:00720+4.2.1.3	Gene3D:1.10.1440.20	MapMan:2.3.2
Gene3D:3.20.19.10	Gene3D:3.30.499.10	Gene3D:3.30.499.20	MapMan:5.7.3.6.2	InterPro:Acnase/IPM_dHydase_lsu_aba_1/3	InterPro:Acoase/IPM_deHydtase_lsu_aba
InterPro:Aconitase/3IPM_dehydase_swvl	InterPro:Aconitase/IRP2	InterPro:AconitaseA/IPMdHydase_ssu_swvl	InterPro:Aconitase_4Fe-4S_BS	InterPro:Aconitase_4Fe-4S_dom	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0003994	GO:GO:0005488	GO:GO:0005507
GO:GO:0005575	GO:GO:0005576	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0005773	GO:GO:0005829	GO:GO:0005886	GO:GO:0006101	GO:GO:0006102	GO:GO:0006950
GO:GO:0008150	GO:GO:0008152	GO:GO:0009506	GO:GO:0009605	GO:GO:0009628	GO:GO:0009651
GO:GO:0009987	GO:GO:0009991	GO:GO:0016020	GO:GO:0048027	GO:GO:0048046	GO:GO:1990641
InterPro:IPR015928	InterPro:IPR015931	PFAM:PF00330	PFAM:PF00694	PRINTS:PR00415	ScanProsite:PS00450
ScanProsite:PS01244	PANTHER:PTHR11670	PANTHER:PTHR11670:SF49	SUPFAM:SSF52016	SUPFAM:SSF53732	TIGRFAMs:TIGR01341
EnsemblPlantsGene:TraesCS5A01G505000	EnsemblPlants:TraesCS5A01G505000.2	TIGR:cd01580	TIGR:cd01586	SEG:seg	:

Description

No Description!

Coordinates

chr5A:-:670407359..670414289

Molecular Weight (calculated)

106937.0 Da

IEP (calculated)

7.068

GRAVY (calculated)

-0.128

Length

995 amino acids

Sequence
(BLAST)

001: MPPLASSLLL SRSAAGPGSA RATAAAAAAI SRPAAAEPAP CPSAPAPSPL HAARGGQGPR GAFASGLAGR LFGGRRAAAR SSSSAAAVFE RRFASAATKN
101: SYDEILTSLA KPGGGADFGK YYSLPALADP RIDRLPYSIR ILLESAIRNC DEFQVTGKDV EKILDWENSA TKQVEIPFKP ARVLLQDFTG VPAVVDLACM
201: RDAMSKLGSD PNKINPLVPV DLVVDHSVQV DVARSENAVQ ANMELEFSRN KERFGFLKWG STAFNNMLVV PPGSGIVHQV NLEYLARVVF NNGGILYPDS
301: VVGTDSHTTM IDGLGVAGWG VGGIEAEATM LGQPMSMVLP AVVGFKLSGK LRNGVTATDL VLTVTQMLRK HGVVGKFVEF YGGGMGELSL ADRATIANMA
401: PEYGATMGFF PVDAKTLDYL KLTGRSDETV AMIETYLRAN NMFVDYKQVQ AERVYSSYLE LDLDEVEPCL SGPKRPHDRV TLKNMQSDWL SCLDNKVGFK
501: GFAVPKESQA KVAEFSFRGT PAKIKHGDVV IAAITSCTNT SNPNVMLGAA LVAKKACDLG LEVKPWIKTS LAPGSGVVKK YLDKSGLQKY LNQLGFNIVG
601: YGCTTCIGNS GDLDESVAAA ITDNDVVAAA VLSGNRNFEG RVHALTRANY LASPPLVVAY ALAGTVNIDF EKEPVGISKD GKEVYFRDIW PTTDEIAEVV
701: KASVLPDMFK GTYEAITKGN PMWNELPVSA STLYPWDPKS TYIHEPPYFK DMTMTPPGAR PVKDAYCLLN FGDSITTDHI SPAGSIHPDS PAAKYLKERN
801: VERKDFNSYG SRRGNDEIMA RGTFANIRIV NKFLKGEVGP QTIHVPSGEK LAVFDAAMKY KNEGHDTIIL AGAEYGSGSS RDWAAKGPML QGVKAVIAKS
901: FERIHRSNLA GMGIVPLCFK AGEDADTLGL TGHERYTIQL PTDVNEIKPG QDVTVTTDNG KSFTCTLRFD TEVELAYYTH GGILPYVIRK IAAEQ

Best Arabidopsis Sequence Match ( AT2G05710.1 )
(BLAST)

001: MYLTASSSAS SSIIRAASSR SSSLFSFRSV LSPSVSSTSP SSLLARRSFG TISPAFRRWS HSFHSKPSPF RFTSQIRAVS PVLDRLQRTF SSMASEHPFK
101: GIFTTLPKPG GGEFGKFYSL PALNDPRVDK LPYSIRILLE SAIRNCDNFQ VTKEDVEKII DWEKTSPKQV EIPFKPARVL LQDFTGVPAV VDLACMRDAM
201: NKLGSDSNKI NPLVPVDLVI DHSVQVDVAR SENAVQANME LEFQRNKERF AFLKWGSTAF QNMLVVPPGS GIVHQVNLEY LGRVVFNTKG LLYPDSVVGT
301: DSHTTMIDGL GVAGWGVGGI EAEATMLGQP MSMVLPGVVG FKLAGKMRNG VTATDLVLTV TQMLRKHGVV GKFVEFYGNG MSGLSLADRA TIANMSPEYG
401: ATMGFFPVDH VTLQYLKLTG RSDETVAMIE AYLRANNMFV DYNEPQQDRV YSSYLELNLD DVEPCISGPK RPHDRVTLKE MKADWHSCLD SKVGFKGFAI
501: PKEAQEKVVN FSFDGQPAEL KHGSVVIAAI TSCTNTSNPS VMLGAGLVAK KACDLGLQVK PWIKTSLAPG SGVVTKYLLK SGLQEYLNEQ GFNIVGYGCT
601: TCIGNSGEIN ESVGAAITEN DIVAAAVLSG NRNFEGRVHP LTRANYLASP PLVVAYALAG TVNIDFETEP IGKGKNGKDV FLRDIWPTTE EIAEVVQSSV
701: LPDMFRATYE SITKGNPMWN KLSVPENTLY SWDPNSTYIH EPPYFKDMTM DPPGPHNVKD AYCLLNFGDS ITTDHISPAG NIQKDSPAAK FLMERGVDRK
801: DFNSYGSRRG NDEIMARGTF ANIRIVNKLM NGEVGPKTVH IPSGEKLSVF DAAMRYKSSG EDTIILAGAE YGSGSSRDWA AKGPMLQGVK AVIAKSFERI
901: HRSNLVGMGI IPLCFKSGED ADTLGLTGHE RYTIHLPTDI SEIRPGQDVT VTTDNGKSFT CTVRFDTEVE LAYFNHGGIL PYVIRNLSKQ

Arabidopsis Description

ACO3Aconitate hydratase 3, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SIB9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.