Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G051300.1 | Wheat | nucleus | 92.08 | 91.55 |
| TraesCS4D01G253200.1 | Wheat | nucleus | 60.41 | 84.43 |
| TraesCS4B01G254000.1 | Wheat | nucleus | 54.25 | 49.2 |
| EER95303 | Sorghum | nucleus, plastid | 52.49 | 46.98 |
| KRH52056 | Soybean | nucleus | 28.45 | 45.97 |
| CDY06752 | Canola | nucleus | 37.54 | 44.91 |
| GSMUA_Achr2P21530_001 | Banana | cytosol, nucleus, plastid | 35.78 | 42.66 |
| AT1G47220.1 | Thale cress | nucleus | 36.66 | 38.23 |
| Solyc12g088530.1.1 | Tomato | nucleus | 39.59 | 38.14 |
| PGSC0003DMT400030222 | Potato | nucleus | 39.0 | 37.57 |
| Solyc12g088500.1.1 | Tomato | nucleus | 39.0 | 37.57 |
| PGSC0003DMT400030176 | Potato | nucleus | 39.0 | 37.36 |
| TraesCS5B01G078200.1 | Wheat | plastid | 41.06 | 37.14 |
| VIT_18s0001g09580.t01 | Wine grape | nucleus, plastid | 39.59 | 36.99 |
| AT5G43080.1 | Thale cress | nucleus | 38.42 | 36.9 |
| Solyc12g088520.1.1 | Tomato | nucleus | 38.12 | 36.62 |
| CDY17091 | Canola | nucleus | 38.42 | 36.59 |
| CDY22369 | Canola | nucleus | 37.54 | 36.47 |
| Solyc04g078310.2.1 | Tomato | nucleus | 39.3 | 36.12 |
| GSMUA_Achr2P21520_001 | Banana | nucleus | 38.12 | 36.11 |
| Solyc12g088470.1.1 | Tomato | nucleus | 38.12 | 36.11 |
| CDY17037 | Canola | nucleus, plastid | 38.42 | 35.99 |
| PGSC0003DMT400055428 | Potato | nucleus | 38.71 | 35.87 |
| Bra040710.1-P | Field mustard | nucleus | 39.0 | 35.85 |
| Bra033658.1-P | Field mustard | nucleus | 37.24 | 35.67 |
| KRH52055 | Soybean | nucleus | 37.24 | 35.47 |
| Os03t0208700-00 | Rice | nucleus | 42.52 | 35.45 |
| AT1G47230.2 | Thale cress | nucleus, plastid | 38.42 | 35.41 |
| TraesCS4B01G078300.1 | Wheat | nucleus | 38.42 | 35.31 |
| Bra040792.1-P | Field mustard | nucleus, plastid | 37.54 | 35.16 |
| Zm00001d048127_P001 | Maize | plastid | 49.27 | 35.07 |
| KRH61371 | Soybean | nucleus | 35.48 | 34.67 |
| KRH15427 | Soybean | nucleus, plastid | 36.95 | 34.62 |
| VIT_03s0091g00280.t01 | Wine grape | nucleus | 34.6 | 34.6 |
| CDY47595 | Canola | nucleus, plastid | 37.54 | 34.5 |
| Bra032220.1-P | Field mustard | nucleus | 36.07 | 34.45 |
| KRH05614 | Soybean | nucleus | 36.95 | 34.33 |
| KRH61369 | Soybean | nucleus | 32.84 | 34.25 |
| KRH61375 | Soybean | nucleus | 32.84 | 34.25 |
| CDY23653 | Canola | nucleus | 35.78 | 34.17 |
| CDY66770 | Canola | nucleus | 36.07 | 33.98 |
| Bra040793.1-P | Field mustard | nucleus | 35.78 | 33.61 |
| CDY47596 | Canola | nucleus | 35.78 | 33.61 |
| Bra040753.1-P | Field mustard | nucleus, plastid | 35.48 | 33.33 |
| CDY17039 | Canola | nucleus | 35.48 | 33.33 |
| PGSC0003DMT400056625 | Potato | nucleus | 36.95 | 33.16 |
| AT1G47210.2 | Thale cress | nucleus | 36.07 | 33.06 |
| CDY06757 | Canola | nucleus, plastid | 35.19 | 33.06 |
| Solyc10g049360.1.1 | Tomato | nucleus | 36.36 | 32.8 |
| KRH61373 | Soybean | nucleus, plastid | 35.78 | 32.53 |
| TraesCS1B01G151800.3 | Wheat | nucleus | 33.72 | 32.39 |
| TraesCS3B01G183400.1 | Wheat | plastid | 35.78 | 23.92 |
| TraesCS5B01G114300.2 | Wheat | plastid | 32.84 | 22.09 |
| TraesCS2B01G422800.1 | Wheat | nucleus | 26.39 | 22.0 |
| TraesCS7B01G472800.1 | Wheat | nucleus | 26.98 | 21.96 |
| TraesCS1B01G320900.1 | Wheat | nucleus, plastid | 26.98 | 21.1 |
| TraesCS1B01G321000.1 | Wheat | nucleus | 26.69 | 20.87 |
| TraesCS3B01G363200.3 | Wheat | nucleus | 26.69 | 19.74 |
| Os03t0208800-00 | Rice | nucleus | 20.23 | 17.38 |
Protein Annotations
| EnsemblPlants:TraesCS4B01G253100.1 | EnsemblPlantsGene:TraesCS4B01G253100 | Gene3D:1.10.472.10 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom | InterPro:Cyclin_N | PANTHER:PTHR10177 |
| PANTHER:PTHR10177:SF231 | PFAM:PF00134 | PFAM:PF02984 | PIRSF:PIRSF001771 | ScanProsite:PS00292 | SEG:seg |
| SMART:SM00385 | SMART:SM01332 | SUPFAM:SSF47954 | TIGR:cd00043 | MapMan:13.1.1.1.1 | : |
Description
No Description!
Coordinates
chr4B:-:518877144..518880118
Molecular Weight (calculated)
38613.1 Da
IEP (calculated)
4.873
GRAVY (calculated)
-0.311
Length
341 amino acids
Sequence
(BLAST)
(BLAST)
001: MEVSDEESVT GPARTPDTDS EPEQPDPAAA PAAIAPYPGD IDDETEADLA RLLDSSEQPD PAALRAGMEP YLGDIDRYMR SLEASRRPRD DYIWTTQEDI
101: NPKMRAVLVD WLVDVSCTFR LPADTLHLAV SYVDRFLTAS VIKWHELQLL GVTALLVAAK YEDDIFVHEV QRYRGVTANT YTTKQVVKME TDILKSLNFE
201: MGSPTARTFL RRYITVCRGR DRAKAKKLEF LCSYLAELSL LDYDCIQFNP SVVAAACLFL ARFTISPTAR PWNLTLQRNT KYKVSDLKSC ILMIHKLQLN
301: GYPGLKEDAI KVKYNDRELE HVSAMDPPEN IPLRFLKDIG Q
101: NPKMRAVLVD WLVDVSCTFR LPADTLHLAV SYVDRFLTAS VIKWHELQLL GVTALLVAAK YEDDIFVHEV QRYRGVTANT YTTKQVVKME TDILKSLNFE
201: MGSPTARTFL RRYITVCRGR DRAKAKKLEF LCSYLAELSL LDYDCIQFNP SVVAAACLFL ARFTISPTAR PWNLTLQRNT KYKVSDLKSC ILMIHKLQLN
301: GYPGLKEDAI KVKYNDRELE HVSAMDPPEN IPLRFLKDIG Q
001: MVSKKDKQIH SDHNPQDASP VEWAEIRHKL LAFQENIQSG SDIDARSDDP QMCGLYVSDI YEYLRELEVK PKLRPLHDYI EKIQEDITPS KRGVLVDWLV
101: EVAEEFELVS ETLYLTVSYI DRFLSLKMVN EHWLQLVGVS AMFIASKYEE KRRPKVEDFC YITANTYTKQ DVLKMEEDIL LALEFELGRP TTNTFLRRFI
201: RVAQEDFKVP NLQLEPLCCY LSELSMLDYS CVKFVPSLLA ASAVFLARFI ILPNQHPWSQ MLEECTKYKA ADLQVCVEIM LDLYLSRSEG ASKAVREKYK
301: QHKFQYVAAI PVYQELPVTF WEDVVTI
101: EVAEEFELVS ETLYLTVSYI DRFLSLKMVN EHWLQLVGVS AMFIASKYEE KRRPKVEDFC YITANTYTKQ DVLKMEEDIL LALEFELGRP TTNTFLRRFI
201: RVAQEDFKVP NLQLEPLCCY LSELSMLDYS CVKFVPSLLA ASAVFLARFI ILPNQHPWSQ MLEECTKYKA ADLQVCVEIM LDLYLSRSEG ASKAVREKYK
301: QHKFQYVAAI PVYQELPVTF WEDVVTI
Arabidopsis Description
CYCA3-3Cyclin-A3-3 [Source:UniProtKB/Swiss-Prot;Acc:A0MEB5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.