Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- vacuole 1
- nucleus 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH52056 | Soybean | nucleus | 45.87 | 71.09 |
| KRH61371 | Soybean | nucleus | 64.22 | 60.17 |
| KRH52055 | Soybean | nucleus | 63.3 | 57.82 |
| KRH61369 | Soybean | nucleus | 57.8 | 57.8 |
| OQU91386 | Sorghum | nucleus | 45.87 | 57.47 |
| CDY06752 | Canola | nucleus | 49.54 | 56.84 |
| KRH61373 | Soybean | nucleus, plastid | 64.53 | 56.27 |
| VIT_18s0001g09580.t01 | Wine grape | nucleus, plastid | 61.16 | 54.79 |
| CDY22369 | Canola | nucleus | 57.49 | 53.56 |
| AT5G43080.1 | Thale cress | nucleus | 57.19 | 52.68 |
| Bra033658.1-P | Field mustard | nucleus | 56.88 | 52.25 |
| PGSC0003DMT400030222 | Potato | nucleus | 55.35 | 51.13 |
| GSMUA_Achr10P... | Banana | nucleus | 49.54 | 51.1 |
| KRH15427 | Soybean | nucleus, plastid | 56.88 | 51.1 |
| Solyc04g078310.2.1 | Tomato | nucleus | 57.8 | 50.94 |
| PGSC0003DMT400055428 | Potato | nucleus | 57.19 | 50.82 |
| KRH05614 | Soybean | nucleus | 56.88 | 50.68 |
| Bra032220.1-P | Field mustard | nucleus | 55.05 | 50.42 |
| CDY47596 | Canola | nucleus | 55.96 | 50.41 |
| CDY17091 | Canola | nucleus | 55.05 | 50.28 |
| CDY23653 | Canola | nucleus | 54.74 | 50.14 |
| Bra040793.1-P | Field mustard | nucleus | 55.66 | 50.14 |
| GSMUA_Achr2P21530_001 | Banana | cytosol, nucleus, plastid | 43.73 | 50.0 |
| CDY17039 | Canola | nucleus | 55.35 | 49.86 |
| CDY17037 | Canola | nucleus, plastid | 55.05 | 49.45 |
| Bra040792.1-P | Field mustard | nucleus, plastid | 55.05 | 49.45 |
| CDY66770 | Canola | nucleus | 54.74 | 49.45 |
| Solyc12g088470.1.1 | Tomato | nucleus | 54.43 | 49.44 |
| PGSC0003DMT400030176 | Potato | nucleus | 53.82 | 49.44 |
| Solyc12g088530.1.1 | Tomato | nucleus | 53.52 | 49.44 |
| CDY47595 | Canola | nucleus, plastid | 55.35 | 48.79 |
| Bra040753.1-P | Field mustard | nucleus, plastid | 54.13 | 48.76 |
| CDY06757 | Canola | nucleus, plastid | 54.13 | 48.76 |
| Solyc12g088500.1.1 | Tomato | nucleus | 52.6 | 48.59 |
| AT1G47230.2 | Thale cress | nucleus, plastid | 54.74 | 48.38 |
| Bra040710.1-P | Field mustard | nucleus | 54.74 | 48.25 |
| Solyc12g088520.1.1 | Tomato | nucleus | 51.99 | 47.89 |
| AT1G47210.2 | Thale cress | nucleus | 53.52 | 47.04 |
| TraesCS4D01G076900.1 | Wheat | nucleus | 53.21 | 47.03 |
| TraesCS5D01G084700.1 | Wheat | nucleus | 53.82 | 46.56 |
| TraesCS5A01G072000.1 | Wheat | plastid | 53.52 | 46.54 |
| TraesCS5B01G078200.1 | Wheat | plastid | 53.52 | 46.42 |
| TraesCS4A01G236700.2 | Wheat | plastid | 53.21 | 46.4 |
| HORVU4Hr1G013320.1 | Barley | nucleus | 52.6 | 46.11 |
| TraesCS4B01G078300.1 | Wheat | nucleus | 52.29 | 46.09 |
| AT1G47220.1 | Thale cress | nucleus | 45.87 | 45.87 |
| Zm00001d033365_P002 | Maize | nucleus | 50.76 | 44.62 |
| Zm00001d013744_P001 | Maize | nucleus | 48.32 | 44.26 |
| GSMUA_Achr6P11130_001 | Banana | nucleus | 52.91 | 44.25 |
| Os12t0581800-01 | Rice | nucleus, plastid | 51.07 | 43.38 |
| GSMUA_Achr2P21520_001 | Banana | nucleus | 46.18 | 41.94 |
| Zm00001d030849_P001 | Maize | nucleus | 53.82 | 41.61 |
| TraesCS4D01G253200.1 | Wheat | nucleus | 30.58 | 40.98 |
| EES16237 | Sorghum | nucleus, plastid | 53.52 | 40.89 |
| Zm00001d041334_P001 | Maize | nucleus, plastid | 52.91 | 39.59 |
| HORVU5Hr1G018820.2 | Barley | nucleus, plastid | 53.52 | 38.55 |
| TraesCS4B01G254000.1 | Wheat | nucleus | 43.43 | 37.77 |
| TraesCS4A01G050700.1 | Wheat | nucleus | 42.81 | 36.84 |
| EER95303 | Sorghum | nucleus, plastid | 42.51 | 36.48 |
| TraesCS4D01G253900.1 | Wheat | nucleus | 41.9 | 36.05 |
| KRH66720 | Soybean | endoplasmic reticulum, vacuole | 21.41 | 35.18 |
| TraesCS4A01G051300.1 | Wheat | nucleus | 34.86 | 33.24 |
| HORVU4Hr1G069310.3 | Barley | nucleus | 41.9 | 33.01 |
| TraesCS4B01G253100.1 | Wheat | nucleus | 34.25 | 32.84 |
| KRH16044 | Soybean | nucleus | 45.87 | 32.54 |
| KRH53279 | Soybean | plastid | 46.48 | 31.67 |
| KRH64625 | Soybean | plastid | 46.48 | 31.41 |
| KRH52524 | Soybean | nucleus | 44.95 | 31.34 |
| KRH05060 | Soybean | nucleus | 43.43 | 30.94 |
| KRH47513 | Soybean | nucleus | 43.12 | 29.62 |
| KRH61850 | Soybean | nucleus | 43.43 | 29.1 |
| KRH16410 | Soybean | plastid | 44.65 | 28.97 |
| KRH17986 | Soybean | plastid | 44.04 | 28.63 |
| KRH44391 | Soybean | nucleus | 40.06 | 27.81 |
| Os03t0607600-00 | Rice | nucleus | 51.07 | 27.47 |
| Os03t0208700-00 | Rice | nucleus | 33.64 | 26.89 |
| Zm00001d048127_P001 | Maize | plastid | 38.84 | 26.51 |
| KRH66715 | Soybean | nucleus | 29.05 | 24.23 |
| KRH51329 | Soybean | nucleus, plastid | 30.58 | 24.1 |
| KRH60628 | Soybean | nucleus | 29.36 | 23.7 |
| KRH66718 | Soybean | plastid | 25.99 | 22.79 |
| KRH14611 | Soybean | nucleus | 30.58 | 22.78 |
| KRH73516 | Soybean | nucleus | 30.58 | 22.73 |
| KRH76553 | Soybean | nucleus | 29.05 | 21.99 |
| KRH28901 | Soybean | nucleus | 28.75 | 21.71 |
| KRG95055 | Soybean | nucleus | 29.97 | 21.54 |
| KRH66713 | Soybean | nucleus | 29.05 | 20.93 |
| KRG95056 | Soybean | cytosol | 24.16 | 20.41 |
| Os03t0208800-00 | Rice | nucleus | 14.68 | 12.09 |
| KRH44849 | Soybean | nucleus | 25.69 | 11.34 |
Protein Annotations
| Gene3D:1.10.472.10 | EntrezGene:100776007 | MapMan:13.1.1.1.1 | EMBL:ACUP02002162 | InterPro:Cyclin-A_plant | InterPro:Cyclin-like |
| InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom | InterPro:Cyclin_N | EnsemblPlantsGene:GLYMA_04G043700 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | UniProt:I1JTP1 | EnsemblPlants:KRH61375 | ProteinID:KRH61375 | ProteinID:KRH61375.1 |
| PFAM:PF00134 | PFAM:PF02984 | PIRSF:PIRSF001771 | ScanProsite:PS00292 | PANTHER:PTHR10177 | PANTHER:PTHR10177:SF270 |
| SMART:SM00385 | SMART:SM01332 | SUPFAM:SSF47954 | UniParc:UPI000233950A | SEG:seg | : |
Description
hypothetical protein
Coordinates
chr4:+:3500310..3503486
Molecular Weight (calculated)
37601.5 Da
IEP (calculated)
6.525
GRAVY (calculated)
-0.095
Length
327 amino acids
Sequence
(BLAST)
(BLAST)
001: MESRAAKRRA NQSQNEPLTK RRVVLGELSN LPNLILPQPA VTDKTLTVHN GVSAESNVNA PIVSDIYNYL RTIEMEKRRP MVDYIENVQK EVTTIMRAIL
101: VDWIVEVAEE YKLLSDTIFL SVSYIDRVLS INPVSKPRLQ LLGISSMFIA SKYEEISPPH VEEFCFITDN TYDKTEVVSM EADILKALNF ELGNPTVKTF
201: LRRFTGIACE NKKASSLQFE FMSYYLAELS LLEYCCLKFL PSLVAASVVF LARFIIWPDL QPWTSDLYEC SRYKSVELKE CVLVLHDLYT ARRGGSFQAI
301: REKYKQHKFK YVANLSAPQV PNYLFEE
101: VDWIVEVAEE YKLLSDTIFL SVSYIDRVLS INPVSKPRLQ LLGISSMFIA SKYEEISPPH VEEFCFITDN TYDKTEVVSM EADILKALNF ELGNPTVKTF
201: LRRFTGIACE NKKASSLQFE FMSYYLAELS LLEYCCLKFL PSLVAASVVF LARFIIWPDL QPWTSDLYEC SRYKSVELKE CVLVLHDLYT ARRGGSFQAI
301: REKYKQHKFK YVANLSAPQV PNYLFEE
001: MTEQEICVRV TRAAAKRKAS TAMGIDGDRV NKKRVVLGEL LNVSNVNLLA NLNQKKETQK PKRNLKPPPA KQIKSAPVAI IDLESKSDID SRSDDPQMCG
101: PYVADIYEYL RQLEVKPKQR PLPDYIEKVQ KDVTPSMRGV LVDWLVEVAE EYKLGSETLY LTVSHIDRFL SLKTVNKQKL QLVGVSAMLI ASKYEEISPP
201: KVDDFCYITD NTFSKQDVVK MEADILLALQ FELGRPTINT FMRRFTRVAQ DDFKVPHLQL EPLCCYLSEL SILDYKTVKF VPSLLAASAV FLARFIIRPK
301: QHPWNQMLEE YTKYKAADLQ VCVGIIHDLY LSRRGGALQA VREKYKHHKF QCVATMPVSP ELPVTFWEDV TI
101: PYVADIYEYL RQLEVKPKQR PLPDYIEKVQ KDVTPSMRGV LVDWLVEVAE EYKLGSETLY LTVSHIDRFL SLKTVNKQKL QLVGVSAMLI ASKYEEISPP
201: KVDDFCYITD NTFSKQDVVK MEADILLALQ FELGRPTINT FMRRFTRVAQ DDFKVPHLQL EPLCCYLSEL SILDYKTVKF VPSLLAASAV FLARFIIRPK
301: QHPWNQMLEE YTKYKAADLQ VCVGIIHDLY LSRRGGALQA VREKYKHHKF QCVATMPVSP ELPVTFWEDV TI
Arabidopsis Description
CYCA3-2Cyclin-A3-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6A9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.