CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG95054
KRG97345
KRH01783
KRH03906
KRH05913
KRH06014
KRH10345
KRH17396
KRH17547
KRH24119
KRH24981
KRH29091
KRH30347
KRH31570
KRH32592
KRH37522
KRH46909
KRH48128
KRH51734
KRH56424
KRH57185
KRH57190
KRH61066
KRH62487
KRH66707

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G17620.1	KRH06014	AT1G76540.1	12857813
AT2G17620.1	KRH17547	AT1G76540.1	12857813
AT2G17620.1	KRH37522	AT1G76540.1	12857813
AT2G17620.1	KRH48128	AT1G76540.1	12857813
AT4G35620.1	KRH32592	AT1G07660.1	20706207
AT4G35620.1	KRH56424	AT1G71380.1	20706207
AT4G35620.1	KRH62487	AT1G71380.1	20706207
AT4G35620.1	KRH30347	AT3G45930.1	20706207
AT4G35620.1	KRH24119	AT3G45970.1	20706207
AT4G35620.1	KRH29091	AT3G45970.1	20706207
AT4G35620.1	KRH10345	AT3G53730.1	20706207
AT4G35620.1	KRH24981	AT3G53730.1	20706207
AT4G35620.1	KRG95054	AT3G56690.1	20706207
AT4G35620.1	KRH66707	AT3G56690.1	20706207
AT4G35620.1	KRG97345	AT4G13850.1	20706207
AT4G35620.1	KRH31570	AT4G13850.1	20706207
AT4G35620.1	KRH03906	AT4G24820.1	20706207
AT4G35620.1	KRH57185	AT4G24820.1	20706207
AT4G35620.1	KRH57190	AT4G24820.1	20706207
AT4G35620.1	KRH05913	AT4G38900.1	20706207
AT4G35620.1	KRH17396	AT4G38900.1	20706207
AT4G35620.1	KRH51734	AT4G38900.1	20706207
AT4G35620.1	KRH61066	AT4G38900.1	20706207
AT4G35620.1	KRH01783	AT5G38480.1	20706207
AT4G35620.1	KRH46909	AT5G38480.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH28901	Soybean	nucleus	96.53	96.3
PGSC0003DMT400048062	Potato	nucleus	66.9	67.05
Solyc03g032190.2.1	Tomato	nucleus	66.67	66.82
PGSC0003DMT400003868	Potato	nucleus	65.51	65.36
GSMUA_Achr5P19270_001	Banana	cytosol	32.18	64.06
Solyc02g082820.2.1	Tomato	nucleus	64.35	64.06
CDX72551	Canola	nucleus	59.03	63.59
Bra017726.1-P	Field mustard	nucleus	59.03	62.81
CDY67210	Canola	nucleus	59.03	62.81
Bra024504.1-P	Field mustard	nucleus	59.72	61.58
CDY29184	Canola	nucleus	59.72	61.58
CDY30357	Canola	nucleus	58.1	61.37
AT4G35620.1	Thale cress	nucleus	60.88	61.31
Bra037265.1-P	Field mustard	nucleus	57.87	61.12
GSMUA_Achr8P13320_001	Banana	nucleus	59.26	60.95
CDY26816	Canola	nucleus	57.41	60.93
CDY07838	Canola	nucleus	58.56	60.53
AT2G17620.1	Thale cress	nucleus	59.49	59.91
GSMUA_Achr11P...	Banana	nucleus	55.09	58.33
GSMUA_Achr5P19110_001	Banana	nucleus	57.18	58.25
Os06t0726800-01	Rice	nucleus	56.48	58.23
KRH60628	Soybean	nucleus	54.4	58.02
KRH51329	Soybean	nucleus, plastid	54.86	57.11
Zm00001d036360_P002	Maize	nucleus	55.09	56.13
KXG20945	Sorghum	nucleus	55.09	56.13
Os04t0563700-01	Rice	mitochondrion	52.78	54.29
HORVU7Hr1G121820.6	Barley	nucleus	52.08	53.57
Zm00001d026129_P001	Maize	nucleus	52.55	53.29
TraesCS2A01G404800.1	Wheat	nucleus	49.77	53.09
TraesCS2B01G422800.1	Wheat	nucleus	50.23	53.06
EES12664	Sorghum	nucleus	53.01	53.01
TraesCS7D01G536000.1	Wheat	nucleus	51.39	52.98
TraesCS7A01G549500.1	Wheat	nucleus	51.16	52.74
TraesCS7B01G472800.1	Wheat	nucleus	51.16	52.74
HORVU0Hr1G022770.1	Barley	nucleus, plastid	33.56	52.16
TraesCS2D01G401700.1	Wheat	nucleus, plastid	50.23	51.54
Zm00001d002662_P010	Maize	nucleus	51.62	49.01
HORVU2Hr1G096070.2	Barley	nucleus	50.93	46.71
KRH66720	Soybean	endoplasmic reticulum, vacuole	19.44	42.21
KRH66715	Soybean	nucleus	34.49	38.01
KRH52056	Soybean	nucleus	18.29	37.44
KRG95055	Soybean	nucleus	39.35	37.36
GSMUA_Achr11P...	Banana	endoplasmic reticulum, vacuole	57.41	37.13
KRH66713	Soybean	nucleus	37.96	36.12
KRH14611	Soybean	nucleus	34.49	33.94
KRH73516	Soybean	nucleus	34.26	33.64
KRH66718	Soybean	plastid	28.24	32.71
KRG95056	Soybean	cytosol	27.55	30.75
KRH61375	Soybean	nucleus	21.99	29.05
KRH61371	Soybean	nucleus	23.15	28.65
KRH15427	Soybean	nucleus, plastid	24.07	28.57
KRH05614	Soybean	nucleus	23.15	27.25
KRH52055	Soybean	nucleus	22.22	26.82
KRH16044	Soybean	nucleus	28.47	26.68
KRH05060	Soybean	nucleus	28.01	26.36
KRH61373	Soybean	nucleus, plastid	22.69	26.13
KRH61369	Soybean	nucleus	19.21	25.38
KRH61850	Soybean	nucleus	28.47	25.2
KRH52524	Soybean	nucleus	26.85	24.73
KRH44391	Soybean	nucleus	26.62	24.42
KRH47513	Soybean	nucleus	26.85	24.37
KRH53279	Soybean	plastid	26.62	23.96
KRH64625	Soybean	plastid	26.62	23.76
KRH16410	Soybean	plastid	26.16	22.42
KRH17986	Soybean	plastid	25.93	22.27
KRH44849	Soybean	nucleus	32.87	19.16

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.2	EMBL:ACUP02000620	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_C-dom
InterPro:Cyclin_N	EnsemblPlantsGene:GLYMA_01G159700	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
UniProt:K7K449	EnsemblPlants:KRH76553	ProteinID:KRH76553	ProteinID:KRH76553.1	PFAM:PF00134	PFAM:PF02984
PIRSF:PIRSF001771	ScanProsite:PS00292	PANTHER:PTHR10177	PANTHER:PTHR10177:SF261	SMART:SM00385	SMART:SM01332
SUPFAM:SSF47954	UniParc:UPI0002337B01	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:49820834..49824269

Molecular Weight (calculated)

49170.1 Da

IEP (calculated)

5.517

GRAVY (calculated)

-0.346

Length

432 amino acids

Sequence
(BLAST)

001: MKISDENSSK PINPTSFQGG IECVGNRKMG QNRRALSVIN QDLVAEGRPY PCVVNKRALA EKHDVCEKKQ ADPGHRPITR RFAAQIASTQ KNRAEGTKKS
101: NLGNSNSNGF GDSIFVDEEH KPTTDDQPVP MSLEQTEPMH SESDQMEEVE MEDIIEETVL DIDTCDANNP LAVVDYIEDL YAHYRKMEGT SCVSPDYMAQ
201: QFDINERMRA ILIDWLIEVH DKFDLLHETL FLTVNLIDRF LAKQTVVRKK LQLVGLVAML LACKYEEVSV PVVGDLILIS DKAYTRKEVL EMEKLMVNTL
301: QFNMSVPTAY VFMKRFLKAA QADRKLELLA FFLVELTLVE YEMLKFPPSL LAASAVYTAQ CTIYGFKQWN KTCEWHSNYS EDQLLECSTL MADFHQKAGN
401: GKLTGVHRKY CSSKFSYTAK CEPPRFLLEK PL

Best Arabidopsis Sequence Match ( AT1G20610.1 )
(BLAST)

001: MVRSDENSLG LIGSMSLQGG GVVGKIKTTA TTGPTRRALS TINKNITEAP SYPYAVNKRS VSERDGICNK PPVHRPVTRK FAAQLADHKP HIRDEETKKP
101: DSVSSEEPET IIIDVDESDK EGGDSNEPMF VQHTEAMLEE IEQMEKEIEM EDADKEEEPV IDIDACDKNN PLAAVEYIHD MHTFYKNFEK LSCVPPNYMD
201: NQQDLNERMR GILIDWLIEV HYKFELMEET LYLTINVIDR FLAVHQIVRK KLQLVGVTAL LLACKYEEVS VPVVDDLILI SDKAYSRREV LDMEKLMANT
301: LQFNFSLPTP YVFMKRFLKA AQSDKKLEIL SFFMIELCLV EYEMLEYLPS KLAASAIYTA QCTLKGFEEW SKTCEFHTGY NEKQLLACAR KMVAFHHKAG
401: TGKLTGVHRK YNTSKFCHAA RTEPAGFLI

Arabidopsis Description

CYCB2-3Cyclin-B2-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LDM4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.