Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G549500.1 | Wheat | nucleus | 94.52 | 94.75 |
| TraesCS7D01G536000.1 | Wheat | nucleus | 94.05 | 94.27 |
| TraesCS7B01G472800.1 | Wheat | nucleus | 93.57 | 93.79 |
| Os06t0726800-01 | Rice | nucleus | 78.33 | 78.52 |
| HORVU0Hr1G022770.1 | Barley | nucleus, plastid | 51.43 | 77.7 |
| KXG20945 | Sorghum | nucleus | 78.1 | 77.36 |
| Zm00001d036360_P002 | Maize | nucleus | 76.43 | 75.71 |
| GSMUA_Achr5P19270_001 | Banana | cytosol | 33.33 | 64.52 |
| PGSC0003DMT400075380 | Potato | nucleus | 35.71 | 63.29 |
| CDY31481 | Canola | nucleus | 32.62 | 63.13 |
| GSMUA_Achr11P... | Banana | nucleus | 58.1 | 59.8 |
| GSMUA_Achr8P13320_001 | Banana | nucleus | 58.1 | 58.1 |
| GSMUA_Achr5P19110_001 | Banana | nucleus | 58.57 | 58.02 |
| Solyc04g082430.2.1 | Tomato | nucleus | 54.05 | 57.76 |
| VIT_18s0001g14170.t01 | Wine grape | nucleus | 59.05 | 56.24 |
| Bra016460.1-P | Field mustard | nucleus | 54.05 | 55.37 |
| PGSC0003DMT400025854 | Potato | nucleus | 58.1 | 55.33 |
| CDY33634 | Canola | nucleus | 53.57 | 55.15 |
| CDX96631 | Canola | nucleus | 53.57 | 54.88 |
| VIT_03s0038g02800.t01 | Wine grape | nucleus, plastid | 54.52 | 54.01 |
| CDX85942 | Canola | nucleus | 52.14 | 53.68 |
| Bra003727.1-P | Field mustard | nucleus | 48.81 | 53.52 |
| KRH60628 | Soybean | nucleus | 51.19 | 53.09 |
| KRH51329 | Soybean | nucleus, plastid | 52.14 | 52.77 |
| Bra015762.1-P | Field mustard | nucleus | 54.05 | 52.67 |
| KRH28901 | Soybean | nucleus | 54.29 | 52.66 |
| Bra025831.1-P | Field mustard | nucleus | 51.19 | 52.44 |
| CDX87612 | Canola | nucleus | 53.81 | 52.44 |
| CDX88261 | Canola | nucleus | 53.57 | 52.33 |
| KRH76553 | Soybean | nucleus | 53.57 | 52.08 |
| CDY29520 | Canola | nucleus | 50.71 | 51.95 |
| AT1G20610.1 | Thale cress | nucleus | 52.86 | 51.75 |
| PGSC0003DMT400048062 | Potato | nucleus | 53.1 | 51.74 |
| CDX68105 | Canola | nucleus | 48.57 | 51.65 |
| Solyc03g032190.2.1 | Tomato | nucleus | 52.62 | 51.28 |
| PGSC0003DMT400003868 | Potato | nucleus | 52.38 | 50.81 |
| Solyc12g094600.1.1 | Tomato | nucleus | 51.19 | 50.59 |
| Solyc02g082820.2.1 | Tomato | nucleus | 52.14 | 50.46 |
| PGSC0003DMT400093973 | Potato | nucleus | 39.29 | 50.0 |
| AT1G76310.3 | Thale cress | nucleus | 54.52 | 49.89 |
| CDX72551 | Canola | nucleus | 47.38 | 49.63 |
| CDY67210 | Canola | nucleus | 47.86 | 49.51 |
| Bra017726.1-P | Field mustard | nucleus | 47.86 | 49.51 |
| CDY30357 | Canola | nucleus | 48.1 | 49.39 |
| CDY26816 | Canola | nucleus | 47.86 | 49.39 |
| CDY29184 | Canola | nucleus | 49.05 | 49.16 |
| Bra024504.1-P | Field mustard | nucleus | 49.05 | 49.16 |
| Bra037265.1-P | Field mustard | nucleus | 47.86 | 49.14 |
| CDY07838 | Canola | nucleus | 48.81 | 49.04 |
| AT4G35620.1 | Thale cress | nucleus | 50.0 | 48.95 |
| Solyc02g061650.1.1 | Tomato | nucleus | 40.48 | 48.43 |
| AT2G17620.1 | Thale cress | nucleus | 49.29 | 48.25 |
| HORVU2Hr1G096070.2 | Barley | nucleus | 53.57 | 47.77 |
| AT1G20590.1 | Thale cress | cytosol, golgi, nucleus, plastid | 29.29 | 46.42 |
| HORVU0Hr1G001680.1 | Barley | nucleus | 28.81 | 37.81 |
| GSMUA_Achr11P... | Banana | endoplasmic reticulum, vacuole | 57.86 | 36.38 |
| HORVU1Hr1G068080.1 | Barley | plastid | 29.52 | 36.26 |
| HORVU1Hr1G068010.7 | Barley | mitochondrion, nucleus | 35.95 | 35.95 |
| HORVU3Hr1G078880.2 | Barley | nucleus | 37.62 | 34.88 |
| HORVU0Hr1G001690.16 | Barley | nucleus, peroxisome | 35.48 | 34.02 |
| HORVU1Hr1G068160.2 | Barley | nucleus, plastid | 35.0 | 33.18 |
| HORVU0Hr1G026010.1 | Barley | nucleus, plastid | 35.0 | 33.18 |
| HORVU3Hr1G040990.2 | Barley | nucleus, plastid | 34.29 | 29.27 |
| HORVU4Hr1G013320.1 | Barley | nucleus | 25.48 | 28.69 |
| HORVU3Hr1G114440.21 | Barley | nucleus, plastid | 30.95 | 25.64 |
| HORVU4Hr1G069310.3 | Barley | nucleus | 24.05 | 24.34 |
| HORVU5Hr1G018820.2 | Barley | nucleus, plastid | 24.76 | 22.91 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.2 | UniProt:A0A287Y1U4 | ncoils:Coil | InterPro:Cyclin-like | InterPro:Cyclin-like_sf |
| InterPro:Cyclin_C-dom | InterPro:Cyclin_N | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| EnsemblPlantsGene:HORVU7Hr1G121820 | EnsemblPlants:HORVU7Hr1G121820.6 | PFAM:PF00134 | PFAM:PF02984 | PIRSF:PIRSF001771 | ScanProsite:PS00292 |
| PANTHER:PTHR10177 | PANTHER:PTHR10177:SF338 | SMART:SM00385 | SMART:SM01332 | SUPFAM:SSF47954 | UniParc:UPI000B46432F |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chrchr7H:+:654582272..654584871
Molecular Weight (calculated)
47132.7 Da
IEP (calculated)
5.261
GRAVY (calculated)
-0.295
Length
420 amino acids
Sequence
(BLAST)
(BLAST)
001: MENVRSLNHR GAAMEGVKLG SEAAANTNRR ALRDIKNILG APHQPQAVSK RGLQEKPAAA GAKSQPGAVG HRPVTRKFAA ILQQSQPANA PLAPSGSERQ
101: KRNADTAFNA PSDMEASDDD LDEMVSRMTN ELKEIDMEED TEEEEEMPDI DSCDVGNSLA VVEYLDEIYS FYRRTEELSC VSPTYMAHQS DINEKMRGIL
201: IDWLIEVHYK LELLGETLFL TVNIIDRYLA RENVARKKLQ LVGVTAMLLA CKYEEVSVPV VEDLILICDR AYTREDILEM ERMVVDRLEF NMSVPTPYCF
301: MRRFLKAAGS DKKLELLSFF LIELSLVDYK MLKFQPSMLA AAAIYTAQCT LHGCMSWNKC CELHTKYSEQ QLKECSTMMV ELHQGAAGGK LTGVHRKYST
401: FRYGCAAKSE PAAFLLDARA
101: KRNADTAFNA PSDMEASDDD LDEMVSRMTN ELKEIDMEED TEEEEEMPDI DSCDVGNSLA VVEYLDEIYS FYRRTEELSC VSPTYMAHQS DINEKMRGIL
201: IDWLIEVHYK LELLGETLFL TVNIIDRYLA RENVARKKLQ LVGVTAMLLA CKYEEVSVPV VEDLILICDR AYTREDILEM ERMVVDRLEF NMSVPTPYCF
301: MRRFLKAAGS DKKLELLSFF LIELSLVDYK MLKFQPSMLA AAAIYTAQCT LHGCMSWNKC CELHTKYSEQ QLKECSTMMV ELHQGAAGGK LTGVHRKYST
401: FRYGCAAKSE PAAFLLDARA
001: MVRSDENSLG LIGSMSLQGG GVVGKIKTTA TTGPTRRALS TINKNITEAP SYPYAVNKRS VSERDGICNK PPVHRPVTRK FAAQLADHKP HIRDEETKKP
101: DSVSSEEPET IIIDVDESDK EGGDSNEPMF VQHTEAMLEE IEQMEKEIEM EDADKEEEPV IDIDACDKNN PLAAVEYIHD MHTFYKNFEK LSCVPPNYMD
201: NQQDLNERMR GILIDWLIEV HYKFELMEET LYLTINVIDR FLAVHQIVRK KLQLVGVTAL LLACKYEEVS VPVVDDLILI SDKAYSRREV LDMEKLMANT
301: LQFNFSLPTP YVFMKRFLKA AQSDKKLEIL SFFMIELCLV EYEMLEYLPS KLAASAIYTA QCTLKGFEEW SKTCEFHTGY NEKQLLACAR KMVAFHHKAG
401: TGKLTGVHRK YNTSKFCHAA RTEPAGFLI
101: DSVSSEEPET IIIDVDESDK EGGDSNEPMF VQHTEAMLEE IEQMEKEIEM EDADKEEEPV IDIDACDKNN PLAAVEYIHD MHTFYKNFEK LSCVPPNYMD
201: NQQDLNERMR GILIDWLIEV HYKFELMEET LYLTINVIDR FLAVHQIVRK KLQLVGVTAL LLACKYEEVS VPVVDDLILI SDKAYSRREV LDMEKLMANT
301: LQFNFSLPTP YVFMKRFLKA AQSDKKLEIL SFFMIELCLV EYEMLEYLPS KLAASAIYTA QCTLKGFEEW SKTCEFHTGY NEKQLLACAR KMVAFHHKAG
401: TGKLTGVHRK YNTSKFCHAA RTEPAGFLI
Arabidopsis Description
CYCB2-3Cyclin-B2-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LDM4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.