Factsheet for PGSC0003DMT400093973

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400009538
PGSC0003DMT400018483
PGSC0003DMT400021687
PGSC0003DMT400025910
PGSC0003DMT400040748
PGSC0003DMT400047948
PGSC0003DMT400050389
PGSC0003DMT400053017
PGSC0003DMT400062153
PGSC0003DMT400062212

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G17620.1	PGSC0003DMT400025910	AT1G76540.1	12857813
AT4G35620.1	PGSC0003DMT400021687	AT1G71380.1	20706207
AT4G35620.1	PGSC0003DMT400047948	AT3G45970.1	20706207
AT4G35620.1	PGSC0003DMT400018483	AT3G56690.1	20706207
AT4G35620.1	PGSC0003DMT400040748	AT4G13850.1	20706207
AT4G35620.1	PGSC0003DMT400053017	AT4G13850.1	20706207
AT4G35620.1	PGSC0003DMT400062212	AT4G24820.1	20706207
AT4G35620.1	PGSC0003DMT400009538	AT4G38900.1	20706207
AT4G35620.1	PGSC0003DMT400050389	AT5G38480.1	20706207
AT4G35620.1	PGSC0003DMT400062153	AT5G38480.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g061650.1.1	Tomato	nucleus	77.88	73.22
PGSC0003DMT400075380	Potato	nucleus	43.64	60.76
GSMUA_Achr5P19270_001	Banana	cytosol	35.15	53.46
PGSC0003DMT400003868	Potato	nucleus	63.64	48.5
PGSC0003DMT400048062	Potato	nucleus	61.82	47.33
CDX72551	Canola	nucleus	55.45	45.64
CDY67210	Canola	nucleus	55.45	45.07
Bra017726.1-P	Field mustard	nucleus	54.85	44.58
CDY26816	Canola	nucleus	54.55	44.23
CDY07838	Canola	nucleus	55.76	44.02
CDY30357	Canola	nucleus	54.55	44.01
Bra024504.1-P	Field mustard	nucleus	55.76	43.91
CDY29184	Canola	nucleus	55.76	43.91
AT4G35620.1	Thale cress	nucleus	56.97	43.82
Bra037265.1-P	Field mustard	nucleus	54.24	43.77
AT2G17620.1	Thale cress	nucleus	55.76	42.89
GSMUA_Achr8P13320_001	Banana	nucleus	54.24	42.62
HORVU0Hr1G022770.1	Barley	nucleus, plastid	35.45	42.09
Os06t0726800-01	Rice	nucleus	53.03	41.77
GSMUA_Achr11P...	Banana	nucleus	51.52	41.67
TraesCS2A01G404800.1	Wheat	nucleus	50.91	41.48
TraesCS2B01G422800.1	Wheat	nucleus	50.61	40.83
PGSC0003DMT400025854	Potato	nucleus	54.55	40.82
GSMUA_Achr5P19110_001	Banana	nucleus	52.42	40.8
Os04t0563700-01	Rice	mitochondrion	51.82	40.71
TraesCS2D01G401700.1	Wheat	nucleus, plastid	51.21	40.14
Zm00001d036360_P002	Maize	nucleus	51.21	39.86
TraesCS7B01G472800.1	Wheat	nucleus	50.61	39.86
KXG20945	Sorghum	nucleus	50.61	39.39
TraesCS7D01G536000.1	Wheat	nucleus	50.0	39.38
HORVU7Hr1G121820.6	Barley	nucleus	50.0	39.29
TraesCS7A01G549500.1	Wheat	nucleus	49.7	39.14
Zm00001d026129_P001	Maize	nucleus	50.3	38.97
EES12664	Sorghum	nucleus	49.7	37.96
Zm00001d002662_P010	Maize	nucleus	50.61	36.7
HORVU2Hr1G096070.2	Barley	nucleus	50.0	35.03
PGSC0003DMT400030222	Potato	nucleus	32.12	29.94
PGSC0003DMT400018480	Potato	nucleus	38.18	29.65
PGSC0003DMT400058457	Potato	nucleus	37.27	29.43
PGSC0003DMT400030176	Potato	nucleus	31.52	29.21
PGSC0003DMT400015245	Potato	nucleus	36.97	27.79
PGSC0003DMT400055428	Potato	nucleus	30.91	27.72
PGSC0003DMT400072211	Potato	nucleus	38.79	27.59
GSMUA_Achr11P...	Banana	endoplasmic reticulum, vacuole	53.94	26.65
PGSC0003DMT400056625	Potato	nucleus	28.79	25.0
PGSC0003DMT400006576	Potato	nucleus	29.7	21.17
PGSC0003DMT400015424	Potato	plastid	29.7	20.76
PGSC0003DMT400067117	Potato	plastid	29.7	19.72

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.2	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_C-dom	InterPro:Cyclin_N
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	UniProt:M1DT41	PFAM:PF00134
PFAM:PF02984	EnsemblPlantsGene:PGSC0003DMG400043544	PGSC:PGSC0003DMG400043544	EnsemblPlants:PGSC0003DMT400093973	PIRSF:PIRSF001771	ScanProsite:PS00292
PANTHER:PTHR10177	PANTHER:PTHR10177:SF261	SMART:SM00385	SMART:SM01332	SUPFAM:SSF47954	UniParc:UPI00029613E0
SEG:seg	:	:	:	:	:

Description

Cyclin B2 [Source:PGSC_GENE;Acc:PGSC0003DMG400043544]

Coordinates

chr2:+:19506185..19508596

Molecular Weight (calculated)

38439.2 Da

IEP (calculated)

4.574

GRAVY (calculated)

-0.253

Length

330 amino acids

Sequence
(BLAST)

001: MILNQENKKP KPAIENFTIW KEHDTTEAQP VPMCLEQPET FSNDKVTQIE DEMEDVFEEA LIDIDNDDAN NPLAGVEYVG DLYAYYRKME VYSCVSPNYM
101: EQQSEINDNM RGVLIDWIIE VHDKFELKEE TLFLTVNLLD RFLEKQVVAK NKLQLVGLVA FLIAGKYEEI LPPLVHELVV ISYETYTRKD VLEMEKLMLS
201: TLQYNMSFPT PYVFMRRFLK AAQADKKLEE LSFFLMELCL VEYEMLKHPP SFMAAAAIYT AQCTLYGVKE WSRTCEWHTG YSEDHSLMEC AKLIVSYHDK
301: AKTGVHNKYN ISKFGYVAKV EPAYFLVQHS

Best Arabidopsis Sequence Match ( AT1G20610.1 )
(BLAST)

001: MVRSDENSLG LIGSMSLQGG GVVGKIKTTA TTGPTRRALS TINKNITEAP SYPYAVNKRS VSERDGICNK PPVHRPVTRK FAAQLADHKP HIRDEETKKP
101: DSVSSEEPET IIIDVDESDK EGGDSNEPMF VQHTEAMLEE IEQMEKEIEM EDADKEEEPV IDIDACDKNN PLAAVEYIHD MHTFYKNFEK LSCVPPNYMD
201: NQQDLNERMR GILIDWLIEV HYKFELMEET LYLTINVIDR FLAVHQIVRK KLQLVGVTAL LLACKYEEVS VPVVDDLILI SDKAYSRREV LDMEKLMANT
301: LQFNFSLPTP YVFMKRFLKA AQSDKKLEIL SFFMIELCLV EYEMLEYLPS KLAASAIYTA QCTLKGFEEW SKTCEFHTGY NEKQLLACAR KMVAFHHKAG
401: TGKLTGVHRK YNTSKFCHAA RTEPAGFLI

Arabidopsis Description

CYCB2-3Cyclin-B2-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LDM4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.