Factsheet for PGSC0003DMT400058457

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g009040.2.1	Tomato	nucleus	95.22	91.49
PGSC0003DMT400015245	Potato	nucleus	67.46	64.24
VIT_06s0009g02090.t01	Wine grape	nucleus	63.16	63.16
TraesCSU01G217300.1	Wheat	cytosol	29.9	57.87
HORVU0Hr1G001680.1	Barley	nucleus	44.02	57.5
PGSC0003DMT400018480	Potato	nucleus	57.42	56.47
KRH14611	Soybean	nucleus	58.85	56.04
KRH73516	Soybean	nucleus	57.89	55.0
Zm00001d019469_P001	Maize	extracellular	18.66	54.55
HORVU1Hr1G068080.1	Barley	plastid	44.5	54.39
GSMUA_Achr7P21380_001	Banana	nucleus	58.61	53.61
GSMUA_Achr4P10090_001	Banana	nucleus	54.07	53.18
PGSC0003DMT400072211	Potato	nucleus	58.85	53.02
HORVU1Hr1G068010.7	Barley	mitochondrion, nucleus	52.63	52.38
KXG24389	Sorghum	nucleus	31.34	51.98
GSMUA_AchrUn_...	Banana	nucleus	36.6	51.34
GSMUA_Achr10P...	Banana	nucleus	55.5	51.21
GSMUA_Achr3P24980_001	Banana	nucleus	49.04	50.99
EES03772	Sorghum	nucleus, plastid	54.31	50.56
HORVU0Hr1G001690.16	Barley	nucleus, peroxisome	52.63	50.23
Zm00001d012560_P002	Maize	nucleus, plastid	53.83	50.11
TraesCS1D01G309300.1	Wheat	nucleus, plastid	52.15	50.0
TraesCS1B01G320900.1	Wheat	nucleus, plastid	51.91	49.77
TraesCS3D01G326600.1	Wheat	nucleus	54.07	49.67
TraesCS1A01G309800.1	Wheat	nucleus	51.67	49.54
HORVU3Hr1G078880.2	Barley	nucleus	53.59	49.45
GSMUA_Achr8P23970_001	Banana	nucleus	51.44	49.43
TraesCS3B01G363200.3	Wheat	nucleus	54.31	49.24
TraesCS3A01G333000.2	Wheat	nucleus	54.07	49.13
HORVU1Hr1G068160.2	Barley	nucleus, plastid	51.91	48.98
HORVU0Hr1G026010.1	Barley	nucleus, plastid	51.91	48.98
TraesCS1D01G309400.1	Wheat	nucleus	51.2	48.97
TraesCS1B01G321000.1	Wheat	nucleus	50.48	48.39
PGSC0003DMT400075380	Potato	nucleus	26.55	46.84
Zm00001d043164_P002	Maize	nucleus	53.59	46.28
Zm00001d010656_P001	Maize	nucleus	48.8	45.74
Os01t0281200-01	Rice	nucleus	44.5	43.97
EES18429	Sorghum	mitochondrion	47.85	43.48
TraesCS3D01G195200.1	Wheat	plastid	42.58	43.1
Os05t0493500-00	Rice	nucleus	49.76	42.71
TraesCS3A01G192100.1	Wheat	nucleus, plastid	42.11	42.51
TraesCS7A01G229300.1	Wheat	endoplasmic reticulum	32.3	41.03
EES02793	Sorghum	nucleus	43.78	39.52
Zm00001d008221_P001	Maize	nucleus	43.78	38.2
Os02t0627800-00	Rice	cytosol, mitochondrion, peroxisome	36.12	38.13
PGSC0003DMT400093973	Potato	nucleus	29.43	37.27
HORVU3Hr1G040990.2	Barley	nucleus, plastid	41.87	35.57
PGSC0003DMT400003868	Potato	nucleus	36.12	34.87
PGSC0003DMT400048062	Potato	nucleus	35.17	34.11
PGSC0003DMT400025854	Potato	nucleus	35.89	34.01
Zm00001d020033_P001	Maize	nucleus	43.54	33.46
Zm00001d020996_P001	Maize	nucleus	42.34	32.54
PGSC0003DMT400030222	Potato	nucleus	25.12	29.66
PGSC0003DMT400055428	Potato	nucleus	26.08	29.62
PGSC0003DMT400030176	Potato	nucleus	24.4	28.65
PGSC0003DMT400056625	Potato	nucleus	24.4	26.84
PGSC0003DMT400015424	Potato	plastid	27.27	24.15
PGSC0003DMT400067117	Potato	plastid	27.51	23.14
PGSC0003DMT400006576	Potato	nucleus	25.6	23.11

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.2	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_C-dom	InterPro:Cyclin_N
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	UniProt:M1C2N9	PFAM:PF00134
PFAM:PF02984	EnsemblPlantsGene:PGSC0003DMG401022702	PGSC:PGSC0003DMG401022702	EnsemblPlants:PGSC0003DMT400058457	PIRSF:PIRSF001771	ScanProsite:PS00292
PANTHER:PTHR10177	PANTHER:PTHR10177:SF267	SMART:SM00385	SMART:SM01332	SUPFAM:SSF47954	UniParc:UPI000295CA3E
SEG:seg	:	:	:	:	:

Description

Cyclin B1 [Source:PGSC_GENE;Acc:PGSC0003DMG401022702]

Coordinates

chr1:+:5465649..5468651

Molecular Weight (calculated)

46655.4 Da

IEP (calculated)

9.271

GRAVY (calculated)

-0.260

Length

418 amino acids

Sequence
(BLAST)

001: MGGKQKIGQV AGKNRRVLGD IGNLVIVPAV EGKPKAAQIT RPATRSFCAQ LLANAQAEKN KKPLAEVVNK VVPTKVQVKK AASDNLAPET VIVISPDKEV
101: KQSPLSGRRK TKKSGKTLTS TLTARSKAAC GLANRPKIDD IDAADVDNHL AAVEYVEDIY NFYKLTEDEG RVSDYMDFQP ELNHKMRAIL VDWLIEVHRK
201: FELMPESLYL TMNILDRFLS VKTVPRRELQ LVGISSMLIA CKYEEIWAPE VNDIIHISDN AYARDQILQM EKAILGKLEW YLTVPTPYVF LVRYIKASTP
301: NDQEMENMAF FFAELGLMNY KTTITCCPSM LAASSVYAAR CTLNKSPLWT QTLQHHTGYS EDQLMESAKG LVSYHLGAAE NKLKAIYRKF SSPDRSAVAL
401: FPPARNLSPT NTYTTTSS

Best Arabidopsis Sequence Match ( AT5G06150.1 )
(BLAST)

001: MATRANVPEQ VRGAPLVDGL KIQNKNGAVK SRRALGDIGN LVSVPGVQGG KAQPPINRPI TRSFRAQLLA NAQLERKPIN GDNKVPALGP KRQPLAARNP
101: EAQRAVQKKN LVVKQQTKPV EVIETKKEVT KKEVAMSPKN KKVTYSSVLS ARSKAACGIV NKPKIIDIDE SDKDNHLAAV EYVDDMYSFY KEVEKESQPK
201: MYMHIQTEMN EKMRAILIDW LLEVHIKFEL NLETLYLTVN IIDRFLSVKA VPKRELQLVG ISALLIASKY EEIWPPQVND LVYVTDNAYS SRQILVMEKA
301: ILGNLEWYLT VPTQYVFLVR FIKASMSDPE MENMVHFLAE LGMMHYDTLT FCPSMLAASA VYTARCSLNK SPAWTDTLQF HTGYTESEIM DCSKLLAFLH
401: SRCGESRLRA VYKKYSKAEN GGVAMVSPAK SLLSAAADWK KPVSS

Arabidopsis Description

CYCB1-2Cyclin-B1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q39067]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.