Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCSU01G217300.1 | Wheat | cytosol | 50.0 | 58.33 |
| KRH66720 | Soybean | endoplasmic reticulum, vacuole | 36.11 | 45.73 |
| EES03772 | Sorghum | nucleus, plastid | 76.19 | 42.76 |
| Zm00001d012560_P002 | Maize | nucleus, plastid | 71.83 | 40.31 |
| Zm00001d043164_P002 | Maize | nucleus | 74.21 | 38.64 |
| GSMUA_AchrUn_... | Banana | nucleus | 45.63 | 38.59 |
| HORVU3Hr1G078880.2 | Barley | nucleus | 63.1 | 35.1 |
| CDY62475 | Canola | nucleus | 48.81 | 35.04 |
| CDY69551 | Canola | nucleus | 49.21 | 34.93 |
| TraesCS3D01G326600.1 | Wheat | nucleus | 62.7 | 34.73 |
| TraesCS3A01G333000.2 | Wheat | nucleus | 62.7 | 34.35 |
| TraesCS3B01G363200.3 | Wheat | nucleus | 62.7 | 34.27 |
| Bra002046.1-P | Field mustard | nucleus | 49.21 | 31.55 |
| KRH66718 | Soybean | plastid | 46.43 | 31.37 |
| PGSC0003DMT400058457 | Potato | nucleus | 51.98 | 31.34 |
| AT2G26760.1 | Thale cress | nucleus | 46.83 | 30.49 |
| TraesCS7A01G229300.1 | Wheat | endoplasmic reticulum | 39.68 | 30.4 |
| KRH66715 | Soybean | nucleus | 47.22 | 30.36 |
| OQU91386 | Sorghum | nucleus | 31.35 | 30.27 |
| EES18429 | Sorghum | mitochondrion | 55.16 | 30.22 |
| PGSC0003DMT400018480 | Potato | nucleus | 50.79 | 30.12 |
| Solyc01g009040.2.1 | Tomato | nucleus | 51.98 | 30.11 |
| Solyc10g078330.1.1 | Tomato | nucleus | 50.0 | 29.79 |
| PGSC0003DMT400015245 | Potato | nucleus | 51.19 | 29.39 |
| CDX69311 | Canola | nucleus | 48.02 | 28.88 |
| Solyc06g073610.2.1 | Tomato | nucleus | 50.4 | 28.86 |
| VIT_06s0009g02090.t01 | Wine grape | nucleus | 47.62 | 28.71 |
| Bra011769.1-P | Field mustard | nucleus | 48.41 | 28.5 |
| CDX75659 | Canola | nucleus | 48.41 | 28.5 |
| AT3G11520.1 | Thale cress | nucleus | 46.83 | 28.5 |
| Bra028741.1-P | Field mustard | nucleus | 46.83 | 28.43 |
| AT4G37490.1 | Thale cress | nucleus | 47.62 | 28.04 |
| KRG95055 | Soybean | nucleus | 50.4 | 27.91 |
| Solyc10g080950.1.1 | Tomato | nucleus | 50.79 | 27.71 |
| VIT_08s0040g00930.t01 | Wine grape | nucleus | 49.6 | 27.59 |
| Bra005880.1-P | Field mustard | nucleus, plastid | 45.24 | 27.54 |
| PGSC0003DMT400072211 | Potato | nucleus | 50.4 | 27.37 |
| KRH66713 | Soybean | nucleus | 49.21 | 27.31 |
| CDY11354 | Canola | plastid | 46.03 | 26.79 |
| KRH14611 | Soybean | nucleus | 46.43 | 26.65 |
| CDX80988 | Canola | plastid | 45.24 | 26.64 |
| VIT_13s0067g01420.t01 | Wine grape | nucleus | 48.81 | 26.62 |
| EES02793 | Sorghum | nucleus | 48.81 | 26.57 |
| AT5G06150.1 | Thale cress | nucleus | 46.43 | 26.29 |
| KRH73516 | Soybean | nucleus | 45.63 | 26.14 |
| KRG95056 | Soybean | cytosol | 39.68 | 25.84 |
| KXG20945 | Sorghum | nucleus | 38.49 | 22.88 |
| EES12664 | Sorghum | nucleus | 37.3 | 21.76 |
| EER95303 | Sorghum | nucleus, plastid | 30.16 | 19.95 |
| EES16237 | Sorghum | nucleus, plastid | 32.94 | 19.39 |
| OQU77084 | Sorghum | nucleus | 36.9 | 19.06 |
| KXG21616 | Sorghum | nucleus, plastid | 34.92 | 18.37 |
| CDY14091 | Canola | plastid | 46.43 | 17.84 |
| KXG23504 | Sorghum | mitochondrion, nucleus | 34.13 | 17.81 |
| CDY04980 | Canola | nucleus | 46.83 | 16.43 |
| AT1G34460.5 | Thale cress | cytosol | 28.57 | 14.46 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:35.1 | UniProt:A0A1B6PFB5 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom |
| InterPro:Cyclin_N | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | EnsemblPlants:KXG24389 |
| ProteinID:KXG24389 | ProteinID:KXG24389.2 | PFAM:PF00134 | PFAM:PF02984 | PIRSF:PIRSF001771 | PANTHER:PTHR10177 |
| PANTHER:PTHR10177:SF343 | SMART:SM00385 | SMART:SM01332 | EnsemblPlantsGene:SORBI_3007G035100 | SUPFAM:SSF47954 | UniParc:UPI000B8BAA7F |
Description
hypothetical protein
Coordinates
chr7:+:3164604..3166759
Molecular Weight (calculated)
28988.2 Da
IEP (calculated)
4.640
GRAVY (calculated)
-0.017
Length
252 amino acids
Sequence
(BLAST)
(BLAST)
001: MPSDPTPLHR HSPPMTVGAP PSPSLSDLLD VNNELAVVEY TEEIYTFYKI AQHERRPCDY LEDQVEIDAN MRAVLVDRIL DAHDRFKLTP DTLYLTIYIM
101: DLYISLQPIL QWELQLVGVS AMLIVCKYEE TWAPEVSELI FISGYPREQI LSMEKAILNR LEWNLTVPTV YKFLLRFLKA ATLGNKAEKE MENMAFFFAE
201: LALLQYDLVT RMPSLVAASA VYAARLTLNK APLWTETLKH HTGFRESEAE LM
101: DLYISLQPIL QWELQLVGVS AMLIVCKYEE TWAPEVSELI FISGYPREQI LSMEKAILNR LEWNLTVPTV YKFLLRFLKA ATLGNKAEKE MENMAFFFAE
201: LALLQYDLVT RMPSLVAASA VYAARLTLNK APLWTETLKH HTGFRESEAE LM
001: MASSRVSDLP HQRGIAGEIK PKNVAGHGRQ NRKVLGDIGN LVTGRDVATG KDVAKKAKQP QQQTKAEVIV ISPDENEKCK PHFSRRTHIR GTKTFTATLR
101: ARSKAASGLK DAVIDIDAVD ANNELAAVEY VEDIFKFYRT VEEEGGIKDY IGSQPEINEK MRSILIDWLV DVHRKFELMP ETLYLTINLV DRFLSLTMVH
201: RRELQLLGLG AMLIACKYEE IWAPEVNDFV CISDNAYNRK QVLAMEKSIL GQVEWYITVP TPYVFLARYV KAAVPCDAEM EKLVFYLAEL GLMQYPIVVL
301: NRPSMLAASA VYAARQILKK TPFWTETLKH HTGYSEDEIM EHAKMLMKLR DSASESKLIA VFKKYSVSEN AEVALLPSLD DFSVSCA
101: ARSKAASGLK DAVIDIDAVD ANNELAAVEY VEDIFKFYRT VEEEGGIKDY IGSQPEINEK MRSILIDWLV DVHRKFELMP ETLYLTINLV DRFLSLTMVH
201: RRELQLLGLG AMLIACKYEE IWAPEVNDFV CISDNAYNRK QVLAMEKSIL GQVEWYITVP TPYVFLARYV KAAVPCDAEM EKLVFYLAEL GLMQYPIVVL
301: NRPSMLAASA VYAARQILKK TPFWTETLKH HTGYSEDEIM EHAKMLMKLR DSASESKLIA VFKKYSVSEN AEVALLPSLD DFSVSCA
Arabidopsis Description
CYCB1-4CYCB1 [Source:UniProtKB/TrEMBL;Acc:A0A178VPU5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.