Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 4
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc10g080950.1.1 | Tomato | nucleus | 97.2 | 97.62 |
| PGSC0003DMT400018480 | Potato | nucleus | 69.4 | 75.76 |
| VIT_08s0040g00930.t01 | Wine grape | nucleus | 65.52 | 67.11 |
| VIT_13s0067g01420.t01 | Wine grape | nucleus | 64.87 | 65.15 |
| KRG95055 | Soybean | nucleus | 62.5 | 63.74 |
| KRH66713 | Soybean | nucleus | 61.85 | 63.22 |
| PGSC0003DMT400058457 | Potato | nucleus | 53.02 | 58.85 |
| KRH66720 | Soybean | endoplasmic reticulum, vacuole | 25.22 | 58.79 |
| KRH66715 | Soybean | nucleus | 49.57 | 58.67 |
| KRH66718 | Soybean | plastid | 46.12 | 57.37 |
| GSMUA_Achr7P21380_001 | Banana | nucleus | 56.25 | 57.11 |
| GSMUA_Achr10P... | Banana | nucleus | 55.17 | 56.51 |
| CDY69551 | Canola | nucleus | 43.1 | 56.34 |
| GSMUA_Achr4P10090_001 | Banana | nucleus | 51.51 | 56.24 |
| PGSC0003DMT400015245 | Potato | nucleus | 52.8 | 55.81 |
| CDY62475 | Canola | nucleus | 42.03 | 55.56 |
| AT3G11520.1 | Thale cress | nucleus | 49.35 | 55.31 |
| Bra002046.1-P | Field mustard | nucleus | 46.77 | 55.22 |
| TraesCSU01G217300.1 | Wheat | cytosol | 25.43 | 54.63 |
| HORVU0Hr1G001680.1 | Barley | nucleus | 37.5 | 54.38 |
| Bra028741.1-P | Field mustard | nucleus | 48.28 | 53.98 |
| Zm00001d019469_P001 | Maize | extracellular | 16.59 | 53.85 |
| GSMUA_Achr8P23970_001 | Banana | nucleus | 50.22 | 53.56 |
| KRG95056 | Soybean | cytosol | 44.4 | 53.23 |
| Bra005880.1-P | Field mustard | nucleus, plastid | 46.77 | 52.42 |
| EES03772 | Sorghum | nucleus, plastid | 50.65 | 52.34 |
| AT4G37490.1 | Thale cress | nucleus | 48.06 | 52.1 |
| GSMUA_Achr3P24980_001 | Banana | nucleus | 45.04 | 51.99 |
| CDX69311 | Canola | nucleus | 46.77 | 51.79 |
| Zm00001d012560_P002 | Maize | nucleus, plastid | 50.0 | 51.67 |
| HORVU1Hr1G068080.1 | Barley | plastid | 37.93 | 51.46 |
| CDY11354 | Canola | plastid | 47.63 | 51.04 |
| CDX80988 | Canola | plastid | 46.98 | 50.93 |
| AT5G06150.1 | Thale cress | nucleus | 48.71 | 50.79 |
| HORVU3Hr1G078880.2 | Barley | nucleus | 49.35 | 50.55 |
| TraesCS3D01G326600.1 | Wheat | nucleus | 49.57 | 50.55 |
| Bra011769.1-P | Field mustard | nucleus | 46.55 | 50.47 |
| KXG24389 | Sorghum | nucleus | 27.37 | 50.4 |
| TraesCS3B01G363200.3 | Wheat | nucleus | 50.0 | 50.33 |
| CDX75659 | Canola | nucleus | 46.34 | 50.23 |
| TraesCS3A01G333000.2 | Wheat | nucleus | 49.57 | 50.0 |
| GSMUA_AchrUn_... | Banana | nucleus | 32.11 | 50.0 |
| HORVU1Hr1G068010.7 | Barley | mitochondrion, nucleus | 45.04 | 49.76 |
| TraesCS1D01G309300.1 | Wheat | nucleus, plastid | 45.91 | 48.85 |
| TraesCS1B01G320900.1 | Wheat | nucleus, plastid | 45.69 | 48.62 |
| TraesCS1B01G321000.1 | Wheat | nucleus | 45.47 | 48.39 |
| TraesCS1D01G309400.1 | Wheat | nucleus | 45.47 | 48.28 |
| TraesCS1A01G309800.1 | Wheat | nucleus | 45.26 | 48.17 |
| HORVU0Hr1G001690.16 | Barley | nucleus, peroxisome | 45.26 | 47.95 |
| Zm00001d043164_P002 | Maize | nucleus | 49.78 | 47.73 |
| PGSC0003DMT400075380 | Potato | nucleus | 23.92 | 46.84 |
| HORVU0Hr1G026010.1 | Barley | nucleus, plastid | 44.61 | 46.73 |
| HORVU1Hr1G068160.2 | Barley | nucleus, plastid | 44.61 | 46.73 |
| Os01t0281200-01 | Rice | nucleus | 42.46 | 46.57 |
| Zm00001d010656_P001 | Maize | nucleus | 44.61 | 46.41 |
| TraesCS3D01G195200.1 | Wheat | plastid | 40.52 | 45.52 |
| TraesCS3A01G192100.1 | Wheat | nucleus, plastid | 40.09 | 44.93 |
| EES18429 | Sorghum | mitochondrion | 44.18 | 44.57 |
| Os05t0493500-00 | Rice | nucleus | 44.4 | 42.3 |
| TraesCS7A01G229300.1 | Wheat | endoplasmic reticulum | 29.53 | 41.64 |
| EES02793 | Sorghum | nucleus | 39.87 | 39.96 |
| Os02t0627800-00 | Rice | cytosol, mitochondrion, peroxisome | 33.19 | 38.89 |
| PGSC0003DMT400093973 | Potato | nucleus | 27.59 | 38.79 |
| Zm00001d008221_P001 | Maize | nucleus | 39.66 | 38.41 |
| PGSC0003DMT400048062 | Potato | nucleus | 34.7 | 37.35 |
| PGSC0003DMT400025854 | Potato | nucleus | 35.13 | 36.96 |
| HORVU3Hr1G040990.2 | Barley | nucleus, plastid | 39.01 | 36.79 |
| PGSC0003DMT400003868 | Potato | nucleus | 34.27 | 36.72 |
| CDY14091 | Canola | plastid | 47.84 | 33.84 |
| Zm00001d020033_P001 | Maize | nucleus | 39.01 | 33.27 |
| Zm00001d020996_P001 | Maize | nucleus | 38.58 | 32.9 |
| AT1G34460.5 | Thale cress | cytosol | 34.48 | 32.13 |
| CDY04980 | Canola | nucleus | 47.84 | 30.92 |
| PGSC0003DMT400055428 | Potato | nucleus | 22.84 | 28.8 |
| PGSC0003DMT400030222 | Potato | nucleus | 21.34 | 27.97 |
| PGSC0003DMT400030176 | Potato | nucleus | 21.12 | 27.53 |
| PGSC0003DMT400015424 | Potato | plastid | 26.29 | 25.85 |
| PGSC0003DMT400056625 | Potato | nucleus | 20.91 | 25.53 |
| PGSC0003DMT400067117 | Potato | plastid | 25.65 | 23.94 |
| PGSC0003DMT400006576 | Potato | nucleus | 22.84 | 22.89 |
Protein Annotations
| Gene3D:1.10.472.10 | EntrezGene:102586092 | MapMan:13.1.1.1.2 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom |
| InterPro:Cyclin_N | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | UniProt:M1CPV1 |
| PFAM:PF00134 | PFAM:PF02984 | EnsemblPlantsGene:PGSC0003DMG400028099 | PGSC:PGSC0003DMG400028099 | EnsemblPlants:PGSC0003DMT400072211 | PIRSF:PIRSF001771 |
| ScanProsite:PS00292 | PANTHER:PTHR10177 | PANTHER:PTHR10177:SF352 | SMART:SM00385 | SMART:SM01332 | SUPFAM:SSF47954 |
| UniParc:UPI0002957E92 | RefSeq:XP_006339254.1 | SEG:seg | : | : | : |
Description
B-type cyclin [Source:PGSC_GENE;Acc:PGSC0003DMG400028099]
Coordinates
chr10:-:56976620..56979290
Molecular Weight (calculated)
51293.0 Da
IEP (calculated)
8.749
GRAVY (calculated)
-0.159
Length
464 amino acids
Sequence
(BLAST)
(BLAST)
001: MAARNILQQQ NRGEAVPGAI KQKNMAGAQG RNRKALGDIG NMVTVRGGVE GGKPLPQVSR PITRSFCAQL LANAQAAADN QKKSMVVNGD GPIVANGALP
101: VKAAPVARKP AQKKAAAIVK PMPEVIEISP DTVEQVKENK QKKKAANDSS MKKAATLTST LTARSKAACG LSHKPKNQIV DIDATDVNNE LAVLEYVEDI
201: YTFYKIAENE SRIHDYMDSQ PEINERMRSI LIDWLIEVHQ KFELNQETLY LTINIVDRYL AVTTTSRREL QLVGMSAMLI ASKYEEIWAP EVNDFVCISD
301: RAYDHEQVLG MEKRILGQLE WYLTVPTPYV FLVRFIKAAV SDAHANVAVL NSCNVTSMEN MVYFLAELGL MNYATNIYCS SMIAASAVYV ARHALNCSPF
401: WNETLKLHTG FSESQLLGCA KLLVSYHMEA PQHKLRVIYK KYSSSHRGAV ALNPPAISLL ALHE
101: VKAAPVARKP AQKKAAAIVK PMPEVIEISP DTVEQVKENK QKKKAANDSS MKKAATLTST LTARSKAACG LSHKPKNQIV DIDATDVNNE LAVLEYVEDI
201: YTFYKIAENE SRIHDYMDSQ PEINERMRSI LIDWLIEVHQ KFELNQETLY LTINIVDRYL AVTTTSRREL QLVGMSAMLI ASKYEEIWAP EVNDFVCISD
301: RAYDHEQVLG MEKRILGQLE WYLTVPTPYV FLVRFIKAAV SDAHANVAVL NSCNVTSMEN MVYFLAELGL MNYATNIYCS SMIAASAVYV ARHALNCSPF
401: WNETLKLHTG FSESQLLGCA KLLVSYHMEA PQHKLRVIYK KYSSSHRGAV ALNPPAISLL ALHE
001: MATRANVPEQ VRGAPLVDGL KIQNKNGAVK SRRALGDIGN LVSVPGVQGG KAQPPINRPI TRSFRAQLLA NAQLERKPIN GDNKVPALGP KRQPLAARNP
101: EAQRAVQKKN LVVKQQTKPV EVIETKKEVT KKEVAMSPKN KKVTYSSVLS ARSKAACGIV NKPKIIDIDE SDKDNHLAAV EYVDDMYSFY KEVEKESQPK
201: MYMHIQTEMN EKMRAILIDW LLEVHIKFEL NLETLYLTVN IIDRFLSVKA VPKRELQLVG ISALLIASKY EEIWPPQVND LVYVTDNAYS SRQILVMEKA
301: ILGNLEWYLT VPTQYVFLVR FIKASMSDPE MENMVHFLAE LGMMHYDTLT FCPSMLAASA VYTARCSLNK SPAWTDTLQF HTGYTESEIM DCSKLLAFLH
401: SRCGESRLRA VYKKYSKAEN GGVAMVSPAK SLLSAAADWK KPVSS
101: EAQRAVQKKN LVVKQQTKPV EVIETKKEVT KKEVAMSPKN KKVTYSSVLS ARSKAACGIV NKPKIIDIDE SDKDNHLAAV EYVDDMYSFY KEVEKESQPK
201: MYMHIQTEMN EKMRAILIDW LLEVHIKFEL NLETLYLTVN IIDRFLSVKA VPKRELQLVG ISALLIASKY EEIWPPQVND LVYVTDNAYS SRQILVMEKA
301: ILGNLEWYLT VPTQYVFLVR FIKASMSDPE MENMVHFLAE LGMMHYDTLT FCPSMLAASA VYTARCSLNK SPAWTDTLQF HTGYTESEIM DCSKLLAFLH
401: SRCGESRLRA VYKKYSKAEN GGVAMVSPAK SLLSAAADWK KPVSS
Arabidopsis Description
CYCB1-2Cyclin-B1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q39067]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.