Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G195200.1 | Wheat | plastid | 97.1 | 97.34 |
| HORVU3Hr1G040990.2 | Barley | nucleus, plastid | 91.06 | 76.63 |
| Os01t0281200-01 | Rice | nucleus | 73.19 | 71.63 |
| Zm00001d019469_P001 | Maize | extracellular | 23.43 | 67.83 |
| Os02t0627800-00 | Rice | cytosol, mitochondrion, peroxisome | 57.0 | 59.6 |
| EES02793 | Sorghum | nucleus | 64.98 | 58.1 |
| Zm00001d008221_P001 | Maize | nucleus | 63.04 | 54.49 |
| KRH66720 | Soybean | endoplasmic reticulum, vacuole | 23.19 | 48.24 |
| Zm00001d020033_P001 | Maize | nucleus | 61.84 | 47.06 |
| Zm00001d020996_P001 | Maize | nucleus | 60.87 | 46.32 |
| VIT_06s0009g02090.t01 | Wine grape | nucleus | 45.65 | 45.22 |
| PGSC0003DMT400018480 | Potato | nucleus | 45.41 | 44.24 |
| Solyc10g078330.1.1 | Tomato | nucleus | 44.93 | 43.97 |
| VIT_08s0040g00930.t01 | Wine grape | nucleus | 47.1 | 43.05 |
| TraesCS3A01G333000.2 | Wheat | nucleus | 47.83 | 43.04 |
| PGSC0003DMT400015245 | Potato | nucleus | 45.41 | 42.82 |
| KRH66715 | Soybean | nucleus | 40.34 | 42.6 |
| AT3G11520.1 | Thale cress | nucleus | 42.51 | 42.51 |
| Bra002046.1-P | Field mustard | nucleus | 40.1 | 42.24 |
| PGSC0003DMT400058457 | Potato | nucleus | 42.51 | 42.11 |
| CDY62475 | Canola | nucleus | 35.51 | 41.88 |
| TraesCS1A01G309800.1 | Wheat | nucleus | 43.72 | 41.51 |
| CDY69551 | Canola | nucleus | 35.51 | 41.41 |
| Solyc06g073610.2.1 | Tomato | nucleus | 43.96 | 41.36 |
| AT2G26760.1 | Thale cress | nucleus | 38.65 | 41.34 |
| Bra028741.1-P | Field mustard | nucleus | 41.3 | 41.2 |
| KRG95055 | Soybean | nucleus | 45.17 | 41.1 |
| Solyc01g009040.2.1 | Tomato | nucleus | 43.0 | 40.92 |
| VIT_13s0067g01420.t01 | Wine grape | nucleus | 45.17 | 40.48 |
| KRH14611 | Soybean | nucleus | 42.75 | 40.32 |
| Solyc10g080950.1.1 | Tomato | nucleus | 44.93 | 40.26 |
| KRH66718 | Soybean | plastid | 36.23 | 40.21 |
| CDX69311 | Canola | nucleus | 40.58 | 40.1 |
| KRH66713 | Soybean | nucleus | 43.96 | 40.09 |
| PGSC0003DMT400072211 | Potato | nucleus | 44.93 | 40.09 |
| Bra011769.1-P | Field mustard | nucleus | 41.06 | 39.72 |
| CDX75659 | Canola | nucleus | 41.06 | 39.72 |
| AT4G37490.1 | Thale cress | nucleus | 40.82 | 39.49 |
| KRH73516 | Soybean | nucleus | 41.79 | 39.32 |
| Bra005880.1-P | Field mustard | nucleus, plastid | 39.13 | 39.13 |
| CDY11354 | Canola | plastid | 40.34 | 38.57 |
| AT5G06150.1 | Thale cress | nucleus | 41.06 | 38.2 |
| CDX80988 | Canola | plastid | 39.37 | 38.08 |
| KRG95056 | Soybean | cytosol | 35.27 | 37.73 |
| TraesCS7A01G229300.1 | Wheat | endoplasmic reticulum | 29.71 | 37.39 |
| TraesCS2A01G404800.1 | Wheat | nucleus | 36.23 | 37.04 |
| TraesCS7A01G549500.1 | Wheat | nucleus | 37.44 | 36.99 |
| TraesCS4A01G236700.2 | Wheat | plastid | 27.54 | 30.4 |
| TraesCS5A01G072000.1 | Wheat | plastid | 27.54 | 30.32 |
| TraesCS4A01G051300.1 | Wheat | nucleus | 22.71 | 27.41 |
| TraesCS4A01G050700.1 | Wheat | nucleus | 25.12 | 27.37 |
| CDY14091 | Canola | plastid | 40.58 | 25.61 |
| TraesCS3A01G523600.1 | Wheat | plastid | 30.92 | 25.25 |
| TraesCS5A01G108500.2 | Wheat | plastid | 29.47 | 24.02 |
| CDY04980 | Canola | nucleus | 41.06 | 23.68 |
| AT1G34460.5 | Thale cress | cytosol | 28.02 | 23.29 |
| TraesCS3A01G157000.1 | Wheat | plastid | 28.74 | 23.2 |
| TraesCS1A01G138300.1 | Wheat | nucleus, plastid | 26.33 | 20.76 |
Protein Annotations
| EnsemblPlants:TraesCS3A01G192100.1 | EnsemblPlantsGene:TraesCS3A01G192100 | Gene3D:1.10.472.10 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom | InterPro:Cyclin_N | PANTHER:PTHR10177 |
| PANTHER:PTHR10177:SF211 | PFAM:PF00134 | PFAM:PF02984 | PIRSF:PIRSF001771 | SEG:seg | SMART:SM00385 |
| SMART:SM01332 | SUPFAM:SSF47954 | TIGR:cd00043 | MapMan:13.1.1.1.2 | : | : |
Description
No Description!
Coordinates
chr3A:-:248218357..248221097
Molecular Weight (calculated)
46035.7 Da
IEP (calculated)
9.777
GRAVY (calculated)
-0.186
Length
414 amino acids
Sequence
(BLAST)
(BLAST)
001: MASRRQAVAA ASDALAQEHK GADAKPVRRP KAAAGQQPAA RPRPALIDLS NRMSGRAALA VPNRPKAVAV AAADNCRKAI KKQKENNRVK PEAVVISSDS
101: ENEKKNPGKR VASWRAPLLT AILTKCSRES DGVISSTKKV LATYNIDKAD AHNELAVVDY VEDIYRFYKS TEGSSRPLCT YMSSQTDINE RMRAILIDWL
201: IEVHHRLMLM PETLYLTVYI IDQYLSMENV LRKELQLVGV SAMLISCKYE EIWAPLVKEL LVLSDNAFSR EQVLSTEKSI LNKLQWNLTV PTVYVFLLRY
301: AKAAMGDKEL ENMAFFYAEL ALVDYSMLVY SPSVTAAAAV YTARCTLNMS PRWSDILEHH TGLGESQLMQ CARRLASLHS TAAGSSKQKV VYNKYANPKF
401: GAVSLYSPAK RLAI
101: ENEKKNPGKR VASWRAPLLT AILTKCSRES DGVISSTKKV LATYNIDKAD AHNELAVVDY VEDIYRFYKS TEGSSRPLCT YMSSQTDINE RMRAILIDWL
201: IEVHHRLMLM PETLYLTVYI IDQYLSMENV LRKELQLVGV SAMLISCKYE EIWAPLVKEL LVLSDNAFSR EQVLSTEKSI LNKLQWNLTV PTVYVFLLRY
301: AKAAMGDKEL ENMAFFYAEL ALVDYSMLVY SPSVTAAAAV YTARCTLNMS PRWSDILEHH TGLGESQLMQ CARRLASLHS TAAGSSKQKV VYNKYANPKF
401: GAVSLYSPAK RLAI
001: MVRSDENSLG LIGSMSLQGG GVVGKIKTTA TTGPTRRALS TINKNITEAP SYPYAVNKRS VSERDGICNK PPVHRPVTRK FAAQLADHKP HIRDEETKKP
101: DSVSSEEPET IIIDVDESDK EGGDSNEPMF VQHTEAMLEE IEQMEKEIEM EDADKEEEPV IDIDACDKNN PLAAVEYIHD MHTFYKNFEK LSCVPPNYMD
201: NQQDLNERMR GILIDWLIEV HYKFELMEET LYLTINVIDR FLAVHQIVRK KLQLVGVTAL LLACKYEEVS VPVVDDLILI SDKAYSRREV LDMEKLMANT
301: LQFNFSLPTP YVFMKRFLKA AQSDKKLEIL SFFMIELCLV EYEMLEYLPS KLAASAIYTA QCTLKGFEEW SKTCEFHTGY NEKQLLACAR KMVAFHHKAG
401: TGKLTGVHRK YNTSKFCHAA RTEPAGFLI
101: DSVSSEEPET IIIDVDESDK EGGDSNEPMF VQHTEAMLEE IEQMEKEIEM EDADKEEEPV IDIDACDKNN PLAAVEYIHD MHTFYKNFEK LSCVPPNYMD
201: NQQDLNERMR GILIDWLIEV HYKFELMEET LYLTINVIDR FLAVHQIVRK KLQLVGVTAL LLACKYEEVS VPVVDDLILI SDKAYSRREV LDMEKLMANT
301: LQFNFSLPTP YVFMKRFLKA AQSDKKLEIL SFFMIELCLV EYEMLEYLPS KLAASAIYTA QCTLKGFEEW SKTCEFHTGY NEKQLLACAR KMVAFHHKAG
401: TGKLTGVHRK YNTSKFCHAA RTEPAGFLI
Arabidopsis Description
CYCB2-3Cyclin-B2-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LDM4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.