Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX69311 | Canola | nucleus | 93.93 | 95.94 |
| AT4G37490.1 | Thale cress | nucleus | 82.71 | 82.71 |
| CDY69551 | Canola | nucleus | 46.03 | 55.49 |
| CDY62475 | Canola | nucleus | 45.09 | 54.99 |
| TraesCSU01G217300.1 | Wheat | cytosol | 27.1 | 53.7 |
| KRH66720 | Soybean | endoplasmic reticulum, vacuole | 24.53 | 52.76 |
| PGSC0003DMT400018480 | Potato | nucleus | 50.93 | 51.29 |
| VIT_08s0040g00930.t01 | Wine grape | nucleus | 53.97 | 50.99 |
| Solyc10g078330.1.1 | Tomato | nucleus | 50.23 | 50.83 |
| KRH66715 | Soybean | nucleus | 46.5 | 50.77 |
| CDX80988 | Canola | plastid | 50.47 | 50.47 |
| CDY11354 | Canola | plastid | 50.47 | 49.88 |
| KRG95055 | Soybean | nucleus | 52.1 | 49.01 |
| Zm00001d019469_P001 | Maize | extracellular | 16.36 | 48.95 |
| KRH66713 | Soybean | nucleus | 51.4 | 48.46 |
| KXG24389 | Sorghum | nucleus | 28.5 | 48.41 |
| VIT_13s0067g01420.t01 | Wine grape | nucleus | 52.1 | 48.27 |
| HORVU0Hr1G001680.1 | Barley | nucleus | 35.98 | 48.12 |
| GSMUA_Achr4P10090_001 | Banana | nucleus | 46.73 | 47.06 |
| GSMUA_Achr7P21380_001 | Banana | nucleus | 50.23 | 47.05 |
| GSMUA_AchrUn_... | Banana | nucleus | 32.71 | 46.98 |
| KRH66718 | Soybean | plastid | 40.89 | 46.92 |
| PGSC0003DMT400072211 | Potato | nucleus | 50.23 | 46.34 |
| Solyc10g080950.1.1 | Tomato | nucleus | 49.77 | 46.1 |
| HORVU1Hr1G068080.1 | Barley | plastid | 36.22 | 45.32 |
| KRG95056 | Soybean | cytosol | 40.42 | 44.7 |
| GSMUA_Achr10P... | Banana | nucleus | 47.2 | 44.59 |
| GSMUA_Achr8P23970_001 | Banana | nucleus | 44.39 | 43.68 |
| HORVU1Hr1G068010.7 | Barley | mitochondrion, nucleus | 42.76 | 43.57 |
| GSMUA_Achr3P24980_001 | Banana | nucleus | 40.89 | 43.53 |
| TraesCS1D01G309400.1 | Wheat | nucleus | 44.16 | 43.25 |
| HORVU3Hr1G078880.2 | Barley | nucleus | 45.56 | 43.05 |
| TraesCS3D01G326600.1 | Wheat | nucleus | 45.56 | 42.86 |
| Zm00001d012560_P002 | Maize | nucleus, plastid | 44.86 | 42.76 |
| EES03772 | Sorghum | nucleus, plastid | 44.63 | 42.54 |
| HORVU0Hr1G001690.16 | Barley | nucleus, peroxisome | 43.46 | 42.47 |
| TraesCS1B01G320900.1 | Wheat | nucleus, plastid | 43.22 | 42.43 |
| TraesCS1B01G321000.1 | Wheat | nucleus | 43.22 | 42.43 |
| TraesCS1D01G309300.1 | Wheat | nucleus, plastid | 43.22 | 42.43 |
| TraesCS3A01G333000.2 | Wheat | nucleus | 45.56 | 42.39 |
| TraesCS3B01G363200.3 | Wheat | nucleus | 45.56 | 42.3 |
| TraesCS1A01G309800.1 | Wheat | nucleus | 42.76 | 41.97 |
| TraesCS3D01G195200.1 | Wheat | plastid | 40.19 | 41.65 |
| CDY31481 | Canola | nucleus | 21.03 | 41.47 |
| TraesCS3A01G192100.1 | Wheat | nucleus, plastid | 39.72 | 41.06 |
| HORVU0Hr1G026010.1 | Barley | nucleus, plastid | 42.29 | 40.86 |
| HORVU1Hr1G068160.2 | Barley | nucleus, plastid | 42.29 | 40.86 |
| Zm00001d043164_P002 | Maize | nucleus | 45.79 | 40.5 |
| Os01t0281200-01 | Rice | nucleus | 39.95 | 40.43 |
| Zm00001d010656_P001 | Maize | nucleus | 42.06 | 40.36 |
| EES18429 | Sorghum | mitochondrion | 42.06 | 39.13 |
| Os05t0493500-00 | Rice | nucleus | 42.76 | 37.58 |
| EES02793 | Sorghum | nucleus | 40.19 | 37.15 |
| Zm00001d008221_P001 | Maize | nucleus | 40.65 | 36.33 |
| CDY26816 | Canola | nucleus | 34.11 | 35.87 |
| TraesCS7A01G229300.1 | Wheat | endoplasmic reticulum | 27.1 | 35.26 |
| Os02t0627800-00 | Rice | cytosol, mitochondrion, peroxisome | 32.48 | 35.1 |
| CDY62408 | Canola | nucleus, plasma membrane, plastid | 17.29 | 35.07 |
| CDY30357 | Canola | nucleus | 33.41 | 34.96 |
| CDY07838 | Canola | nucleus | 33.88 | 34.69 |
| CDY29184 | Canola | nucleus | 33.88 | 34.61 |
| CDY06752 | Canola | nucleus | 22.9 | 34.39 |
| HORVU3Hr1G040990.2 | Barley | nucleus, plastid | 39.49 | 34.35 |
| CDX72551 | Canola | nucleus | 31.78 | 33.92 |
| CDY14091 | Canola | plastid | 51.87 | 33.84 |
| CDX85942 | Canola | nucleus | 32.01 | 33.58 |
| CDY67210 | Canola | nucleus | 31.54 | 33.25 |
| CDX88368 | Canola | plastid | 28.97 | 32.63 |
| CDX68105 | Canola | nucleus | 29.91 | 32.41 |
| CDY33634 | Canola | nucleus | 30.61 | 32.11 |
| CDX96631 | Canola | nucleus | 30.61 | 31.95 |
| CDY29520 | Canola | nucleus | 30.61 | 31.95 |
| CDX87612 | Canola | nucleus | 32.01 | 31.79 |
| CDX88261 | Canola | nucleus | 31.78 | 31.63 |
| Zm00001d020033_P001 | Maize | nucleus | 39.25 | 30.88 |
| CDX87520 | Canola | nucleus | 27.8 | 30.83 |
| CDX92090 | Canola | mitochondrion, nucleus | 25.7 | 30.81 |
| CDY04980 | Canola | nucleus | 51.64 | 30.78 |
| CDY41784 | Canola | plastid | 24.3 | 30.59 |
| CDY17091 | Canola | nucleus | 25.47 | 30.45 |
| Zm00001d020996_P001 | Maize | nucleus | 38.55 | 30.33 |
| CDY22369 | Canola | nucleus | 24.77 | 30.2 |
| CDY17037 | Canola | nucleus, plastid | 25.47 | 29.95 |
| CDY06757 | Canola | nucleus, plastid | 25.0 | 29.48 |
| CDY47595 | Canola | nucleus, plastid | 25.47 | 29.38 |
| CDY17039 | Canola | nucleus | 24.77 | 29.2 |
| CDY47596 | Canola | nucleus | 24.77 | 29.2 |
| CDY23653 | Canola | nucleus | 24.3 | 29.13 |
| CDY61993 | Canola | nucleus | 25.47 | 28.91 |
| CDY66770 | Canola | nucleus | 24.3 | 28.73 |
| CDY48212 | Canola | nucleus | 25.0 | 28.38 |
| CDY65994 | Canola | plastid | 28.5 | 27.54 |
| CDY53304 | Canola | plastid | 25.93 | 27.14 |
| CDY25649 | Canola | plastid | 27.57 | 27.0 |
| CDY02719 | Canola | plastid | 26.87 | 26.81 |
| CDX85466 | Canola | plastid | 26.4 | 26.78 |
| CDX81722 | Canola | nucleus, plastid | 24.77 | 26.3 |
| CDX87087 | Canola | plastid | 25.47 | 26.14 |
| CDX69768 | Canola | nucleus, plastid | 25.93 | 25.4 |
| CDX97090 | Canola | nucleus | 25.7 | 25.23 |
| CDX79389 | Canola | plastid | 25.47 | 25.17 |
| CDX67944 | Canola | plastid | 25.23 | 25.0 |
| CDY36574 | Canola | mitochondrion, nucleus | 25.23 | 24.77 |
| CDY66415 | Canola | nucleus | 24.53 | 24.19 |
| CDX96836 | Canola | nucleus, plastid | 24.77 | 24.09 |
| CDY39984 | Canola | plastid | 24.77 | 23.66 |
| CDY37592 | Canola | mitochondrion, plastid | 25.23 | 23.63 |
| CDY38664 | Canola | nucleus, plastid | 25.0 | 23.52 |
| CDY33338 | Canola | nucleus | 31.07 | 22.77 |
| CDX87305 | Canola | plastid | 24.07 | 22.29 |
| CDX96819 | Canola | nucleus | 32.48 | 21.55 |
| CDY35083 | Canola | cytosol, endoplasmic reticulum, nucleus | 30.37 | 21.35 |
| CDX83953 | Canola | nucleus | 32.01 | 20.92 |
| CDY19803 | Canola | golgi, nucleus, plasma membrane, plastid | 25.93 | 11.22 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.2 | GO:A0A078CHX6 | EnsemblPlants:CDX75659 | ProteinID:CDX75659 | ProteinID:CDX75659.1 |
| InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom | InterPro:Cyclin_N | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | EnsemblPlantsGene:GSBRNA2T00121584001 | PFAM:PF00134 | PFAM:PF02984 | PIRSF:PIRSF001771 |
| ScanProsite:PS00292 | PANTHER:PTHR10177 | PANTHER:PTHR10177:SF267 | SMART:SM00385 | SMART:SM01332 | SUPFAM:SSF47954 |
| UniParc:UPI0004EED8D3 | SEG:seg | : | : | : | : |
Description
BnaA01g00430D
Coordinates
chrLK031804:-:2177328..2179215
Molecular Weight (calculated)
48539.3 Da
IEP (calculated)
8.657
GRAVY (calculated)
-0.404
Length
428 amino acids
Sequence
(BLAST)
(BLAST)
001: MMASRSIVPQ QTTGDVVVIV EDDDKNAAKG RNRQVLRDIG NVVRRNHPKN NDPAKINHPR TRSQHAPLVE LVKPVARRVA VAVPKPRKRA EKPKDVEVIE
101: ISSDSDEEHA VQEKKAAAKK KTSVSYTSVL TARSKAACGL KKKEEIVDID SADAKNDLAA VEYVEDIYSF YKSVESEWRP TDYMRSQPEI NEKMRLILVE
201: WLIDVCVRFE LNPETFYLTV NIMDRFLSAK PIPRKELQLV GLSALLMSSK YEEIWPPQVE DLADIADHAY SHKQILVMEK TILSTLEWYL TVPTHYVFLA
301: RFIKASIADQ RMENMVHYLA ELGVMHYDTT IMFSPSLVAA AAIYAARSAL HQVPVWTSTL KHHTGYSETQ LMDCAKLLAF QQWKQQQQQE EGSESKKGAL
401: RKKYSKEERF GVAMIPPAKS LLTGTDSA
101: ISSDSDEEHA VQEKKAAAKK KTSVSYTSVL TARSKAACGL KKKEEIVDID SADAKNDLAA VEYVEDIYSF YKSVESEWRP TDYMRSQPEI NEKMRLILVE
201: WLIDVCVRFE LNPETFYLTV NIMDRFLSAK PIPRKELQLV GLSALLMSSK YEEIWPPQVE DLADIADHAY SHKQILVMEK TILSTLEWYL TVPTHYVFLA
301: RFIKASIADQ RMENMVHYLA ELGVMHYDTT IMFSPSLVAA AAIYAARSAL HQVPVWTSTL KHHTGYSETQ LMDCAKLLAF QQWKQQQQQE EGSESKKGAL
401: RKKYSKEERF GVAMIPPAKS LLTGTDSA
001: MMTSRSIVPQ QSTDDVVVVD GKNVAKGRNR QVLGDIGNVV RGNYPKNNEP EKINHRPRTR SQNPTLLVED NLKKPVVKRN AVPKPKKVAG KPKVVDVIEI
101: SSDSDEELGL VAAREKKATK KKATTYTSVL TARSKAACGL EKKQKEKIVD IDSADVENDL AAVEYVEDIY SFYKSVESEW RPRDYMASQP DINEKMRLIL
201: VEWLIDVHVR FELNPETFYL TVNILDRFLS VKPVPRKELQ LVGLSALLMS AKYEEIWPPQ VEDLVDIADH AYSHKQILVM EKTILSTLEW YLTVPTHYVF
301: LARFIKASIA DEKMENMVHY LAELGVMHYD TMIMFSPSMV AASAIYAARS SLRQVPIWTS TLKHHTGYSE TQLMDCAKLL AYQQWKQQEE GSESSTKGAL
401: RKKYSKDERF AVALIPPAKA LLTGTESA
101: SSDSDEELGL VAAREKKATK KKATTYTSVL TARSKAACGL EKKQKEKIVD IDSADVENDL AAVEYVEDIY SFYKSVESEW RPRDYMASQP DINEKMRLIL
201: VEWLIDVHVR FELNPETFYL TVNILDRFLS VKPVPRKELQ LVGLSALLMS AKYEEIWPPQ VEDLVDIADH AYSHKQILVM EKTILSTLEW YLTVPTHYVF
301: LARFIKASIA DEKMENMVHY LAELGVMHYD TMIMFSPSMV AASAIYAARS SLRQVPIWTS TLKHHTGYSE TQLMDCAKLL AYQQWKQQEE GSESSTKGAL
401: RKKYSKDERF AVALIPPAKA LLTGTESA
Arabidopsis Description
CYCB1-1Cyclin-B1-1 [Source:UniProtKB/Swiss-Prot;Acc:P30183]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.