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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • nucleus 3
  • plastid 4
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:nucleus, plastid
BaCelLo:nucleus
ChloroP:plastid
MultiLoc:nucleus
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:nucleus
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
AT5G25380.4 Thale cress plastid 77.22 72.69
CDX97090 Canola nucleus 64.75 61.93
CDX69768 Canola nucleus, plastid 64.27 61.33
CDY61993 Canola nucleus 47.24 52.25
VIT_04s0008g04260.t01 Wine grape nucleus, plastid 49.88 51.87
CDY48212 Canola nucleus 46.28 51.19
CDY06752 Canola nucleus 33.33 48.77
CDX81722 Canola nucleus, plastid 46.04 47.64
Solyc06g065680.2.1 Tomato nucleus, plastid 53.48 46.95
CDY53304 Canola plastid 46.04 46.94
KRH52524 Soybean nucleus 52.76 46.91
KRH16044 Soybean nucleus 51.8 46.85
KRH05060 Soybean nucleus 50.6 45.97
CDX79389 Canola plastid 47.72 45.96
KRH61850 Soybean nucleus 53.72 45.9
CDX96836 Canola nucleus, plastid 47.96 45.45
CDY66415 Canola nucleus 47.0 45.16
CDX67944 Canola plastid 46.76 45.14
CDY36574 Canola mitochondrion, nucleus 46.76 44.72
CDY38664 Canola nucleus, plastid 48.2 44.18
CDY22369 Canola nucleus 37.17 44.16
PGSC0003DMT400067117 Potato plastid 52.52 44.06
CDY37592 Canola mitochondrion, plastid 47.96 43.76
CDY39984 Canola plastid 47.0 43.75
CDY17091 Canola nucleus 37.17 43.3
CDY17037 Canola nucleus, plastid 37.65 43.13
CDX87305 Canola plastid 47.24 42.64
CDY47595 Canola nucleus, plastid 37.65 42.32
CDY62408 Canola nucleus, plasma membrane, plastid 21.34 42.18
CDY23653 Canola nucleus 35.49 41.46
CDX88368 Canola plastid 37.65 41.32
CDY66770 Canola nucleus 35.49 40.88
CDY41784 Canola plastid 33.09 40.59
CDY47596 Canola nucleus 35.25 40.5
CDY06757 Canola nucleus, plastid 35.01 40.22
CDY17039 Canola nucleus 35.01 40.22
Bra036544.1-P Field mustard nucleus 94.96 40.12
CDX87520 Canola nucleus 36.93 39.9
CDY19803 Canola golgi, nucleus, plasma membrane, plastid 94.48 39.84
CDY31481 Canola nucleus 19.66 37.79
CDX85466 Canola plastid 37.89 37.44
CDY02719 Canola plastid 38.13 37.06
CDX92090 Canola mitochondrion, nucleus 31.41 36.69
CDY65994 Canola plastid 37.17 34.99
CDY25649 Canola plastid 36.21 34.55
CDY62475 Canola nucleus 25.9 30.77
CDY69551 Canola nucleus 25.9 30.42
CDX72551 Canola nucleus 27.34 28.43
CDX85942 Canola nucleus 27.34 27.94
CDY67210 Canola nucleus 27.1 27.83
CDX96631 Canola nucleus 27.34 27.8
CDY33634 Canola nucleus 27.1 27.7
CDY29184 Canola nucleus 27.82 27.68
CDY11354 Canola plastid 28.54 27.48
CDX80988 Canola plastid 28.06 27.34
CDY29520 Canola nucleus 26.86 27.32
CDY26816 Canola nucleus 26.62 27.27
CDY07838 Canola nucleus 27.34 27.27
CDY30357 Canola nucleus 26.38 26.89
CDX88261 Canola nucleus 27.58 26.74
CDX87612 Canola nucleus 27.58 26.68
CDX69311 Canola nucleus 26.38 26.25
CDX68105 Canola nucleus 24.46 25.82
CDX75659 Canola nucleus 26.14 25.47
CDY14091 Canola plastid 28.3 17.99
CDY33338 Canola nucleus 25.18 17.98
CDY35083 Canola cytosol, endoplasmic reticulum, nucleus 24.94 17.08
CDY04980 Canola nucleus 28.06 16.3
CDX83953 Canola nucleus 25.18 16.03
CDX96819 Canola nucleus 24.7 15.97
Protein Annotations
Gene3D:1.10.472.10MapMan:13.1.1.1.1GO:A0A078DDG5EnsemblPlants:CDX87087ProteinID:CDX87087ProteinID:CDX87087.1
InterPro:Cyclin-likeInterPro:Cyclin-like_sfInterPro:Cyclin_C-domInterPro:Cyclin_NGO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005634EnsemblPlantsGene:GSBRNA2T00145983001PFAM:PF00134PFAM:PF02984PIRSF:PIRSF001771
ScanProsite:PS00292PANTHER:PTHR10177PANTHER:PTHR10177:SF212SMART:SM00385SMART:SM01332SUPFAM:SSF47954
UniParc:UPI0004EED683:::::
Description
BnaC09g04020DCyclin-A2-1 [Source:Projected from Arabidopsis thaliana (AT5G25380) UniProtKB/Swiss-Prot;Acc:Q39071]
Coordinates
chrLK031849:+:369066..371577
Molecular Weight (calculated)
47556.0 Da
IEP (calculated)
9.394
GRAVY (calculated)
-0.429
Length
417 amino acids
Sequence
(BLAST)
001: MYRGSSMHPK ANKETISTAK TRQGNVRVTR SRAKALGTSI SPSKPVFKQQ PKLKKRMASD DTRVCQHKRR AVLKDVTNTL ACLDGNNVKA SKREQDVDAE
101: KSKLAEDLSK IRMVESATNS KDGDQKEDGY DVTGYLKPID IDSNDQDPKF CSLYAANMYD SFHVAELDQR PSTSYMVQVQ RDIGPSMRGI LIDWLVEVSE
201: EYKLASDTLY LAVNLIDRFL SNNYIEKRRL QLLGVTCMLI ASKYEEICAP RLEEFCFITD NTYTRLEVVA METQVLNFLH FRLSVPTTKT FLRRFIQAAK
301: ASDQVLHTEM ESLADYLAEL TLVEYSFLRF LPSLIAASAV FLARWTLDQS KHPWNPTLQH YTRYETPSLK KTVLAMEDLQ LNTSGSTLVA VRNKYNQKFK
401: GVATLRSSER ITTLFSR
Best Arabidopsis Sequence Match ( AT5G25380.1 )
(BLAST)
001: MHRASSKHTN AKKEAISTSK IRDNNVRVTR SRAKALGVSN SPSKPAFKHE TKRVARPSNK RMASDNITVC NQKRRAVLKD VTNTLAESII STEGNVKACK
101: RGGKETKQIE EDGLVDVDGE KSKLAEDLSK IRMVESLDAS ASKQKEDRSD VTDCVQIVDI DSGVQDPQFC SLYAASIYDS INVAELEQRP STSYMVQVQR
201: DIDPTMRGIL IDWLVEVSEE YKLVSDTLYL TVNLIDRFMS HNYIEKQKLQ LLGITCMLIA SKYEEISAPR LEEFCFITDN TYTRLEVLSM EIKVLNSLHF
301: RLSVPTTKTF LRRFIRAAQA SDKVPLIEME YLANYFAELT LTEYTFLRFL PSLIAASAVF LARWTLDQSN HPWNQTLQHY TRYETSALKN TVLAMEELQL
401: NTSGSTLIAI HTKYNQQKFK RVATLTSPER VNTLFSR
Arabidopsis Description
CYCA2-1Cyclin-A2-1 [Source:UniProtKB/Swiss-Prot;Acc:Q39071]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.