Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G16330.1 | CDX87155 | AT5G23810.1 | 20706207 |
| AT1G16330.1 | CDY16869 | AT5G23810.1 | 20706207 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX96819 | Canola | nucleus | 90.08 | 91.47 |
| Bra016640.1-P | Field mustard | nucleus | 91.45 | 91.45 |
| CDY33338 | Canola | nucleus | 73.74 | 82.71 |
| CDY35083 | Canola | cytosol, endoplasmic reticulum, nucleus | 74.05 | 79.64 |
| AT1G16330.1 | Thale cress | nucleus | 78.63 | 79.48 |
| VIT_19s0085g00690.t01 | Wine grape | nucleus | 42.44 | 46.03 |
| CDY31481 | Canola | nucleus | 14.66 | 44.24 |
| KRH44849 | Soybean | nucleus | 41.83 | 36.98 |
| CDX72551 | Canola | nucleus | 21.37 | 34.91 |
| CDX96631 | Canola | nucleus | 21.83 | 34.88 |
| CDY67210 | Canola | nucleus | 21.53 | 34.73 |
| CDY26816 | Canola | nucleus | 21.53 | 34.64 |
| CDY29520 | Canola | nucleus | 21.68 | 34.63 |
| CDY33634 | Canola | nucleus | 21.53 | 34.56 |
| CDY62475 | Canola | nucleus | 18.47 | 34.47 |
| CDY30357 | Canola | nucleus | 21.37 | 34.23 |
| CDY69551 | Canola | nucleus | 18.47 | 34.08 |
| CDX85942 | Canola | nucleus | 21.22 | 34.07 |
| CDY29184 | Canola | nucleus | 21.22 | 33.17 |
| CDY07838 | Canola | nucleus | 21.07 | 33.01 |
| CDX88261 | Canola | nucleus | 21.37 | 32.56 |
| Solyc07g066660.2.1 | Tomato | nucleus | 36.64 | 32.48 |
| CDX69311 | Canola | nucleus | 20.76 | 32.46 |
| CDX68105 | Canola | nucleus | 19.54 | 32.41 |
| CDX87612 | Canola | nucleus | 21.22 | 32.25 |
| CDX75659 | Canola | nucleus | 20.92 | 32.01 |
| CDY11354 | Canola | plastid | 20.92 | 31.64 |
| CDX80988 | Canola | plastid | 20.15 | 30.84 |
| CDY06752 | Canola | nucleus | 13.28 | 30.53 |
| CDY66770 | Canola | nucleus | 16.18 | 29.28 |
| CDY06757 | Canola | nucleus, plastid | 16.03 | 28.93 |
| CDY48212 | Canola | nucleus | 16.49 | 28.65 |
| CDY23653 | Canola | nucleus | 15.57 | 28.57 |
| CDY22369 | Canola | nucleus | 15.11 | 28.21 |
| CDY61993 | Canola | nucleus | 16.03 | 27.85 |
| CDY17091 | Canola | nucleus | 14.96 | 27.37 |
| CDY41784 | Canola | plastid | 14.2 | 27.35 |
| CDY47596 | Canola | nucleus | 15.11 | 27.27 |
| CDY17039 | Canola | nucleus | 14.96 | 27.0 |
| CDX88368 | Canola | plastid | 15.57 | 26.84 |
| CDY47595 | Canola | nucleus, plastid | 15.11 | 26.68 |
| CDY17037 | Canola | nucleus, plastid | 14.81 | 26.65 |
| CDY62408 | Canola | nucleus, plasma membrane, plastid | 8.55 | 26.54 |
| CDX87520 | Canola | nucleus | 15.27 | 25.91 |
| CDX69768 | Canola | nucleus, plastid | 16.95 | 25.4 |
| CDX97090 | Canola | nucleus | 16.79 | 25.23 |
| CDY53304 | Canola | plastid | 15.73 | 25.18 |
| CDX87087 | Canola | plastid | 16.03 | 25.18 |
| CDX79389 | Canola | plastid | 16.64 | 25.17 |
| CDX96836 | Canola | nucleus, plastid | 16.79 | 25.0 |
| CDX92090 | Canola | mitochondrion, nucleus | 13.59 | 24.93 |
| CDX81722 | Canola | nucleus, plastid | 15.27 | 24.81 |
| CDX67944 | Canola | plastid | 16.34 | 24.77 |
| CDY66415 | Canola | nucleus | 16.18 | 24.42 |
| CDY38664 | Canola | nucleus, plastid | 16.95 | 24.4 |
| CDY36574 | Canola | mitochondrion, nucleus | 16.18 | 24.31 |
| CDY37592 | Canola | mitochondrion, plastid | 16.95 | 24.29 |
| CDX85466 | Canola | plastid | 15.27 | 23.7 |
| CDY65994 | Canola | plastid | 15.88 | 23.48 |
| CDY25649 | Canola | plastid | 15.57 | 23.34 |
| CDY02719 | Canola | plastid | 15.27 | 23.31 |
| CDY39984 | Canola | plastid | 15.88 | 23.21 |
| CDX87305 | Canola | plastid | 15.88 | 22.51 |
| CDY14091 | Canola | plastid | 20.61 | 20.58 |
| CDY04980 | Canola | nucleus | 20.46 | 18.66 |
| CDY19803 | Canola | golgi, nucleus, plasma membrane, plastid | 16.03 | 10.62 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.2 | GO:A0A078D9D0 | EnsemblPlants:CDX83953 | ProteinID:CDX83953 | ProteinID:CDX83953.1 |
| InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom | InterPro:Cyclin_N | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | EnsemblPlantsGene:GSBRNA2T00139735001 | PFAM:PF00134 | PFAM:PF02984 | ScanProsite:PS00292 |
| PANTHER:PTHR10177 | PANTHER:PTHR10177:SF222 | SMART:SM00385 | SMART:SM01332 | SUPFAM:SSF47954 | UniParc:UPI0004EEDA14 |
| SEG:seg | : | : | : | : | : |
Description
BnaC08g16920D
Coordinates
chrLK031834:+:1405897..1411053
Molecular Weight (calculated)
73471.9 Da
IEP (calculated)
10.561
GRAVY (calculated)
-0.477
Length
655 amino acids
Sequence
(BLAST)
(BLAST)
001: MAFAKAPRLS KDDVFGNRAV TRSFKVYSDN HKTDQACIVG AAAHKTRVPL RKKPVTISNG AASNTNNMKK GISAITGQDK SSNENSEENT KVTRKVLADL
101: SNLGGNTLRP ALPGNNTVKW KGVKCSNPQR ISVGSTRVND TSLKKSTKVN ESKRITEVGN NGIYKTGHKI IKNRTLSLES TAGGTRKSLP VFKRTSLTDK
201: TTKKVVINIL MILENVSSLD SKQLGQGPAS KVGNRALPQL SSTRSYTWRT RTSVGSIPSD LNNQSKNNVR IRRKSIKIQT TLKTSLQNRS PLKKPPVGRR
301: KSGSVSSIPS TEEAASALSL PEQVETKGLK EDIQEGSSSN EKTDAVTKVL DVTARPKSKR RKSFTSLLVT GLKFDGKNNE TELKEKLPSI DDESNQLEVA
401: EYVDDIYQFY WTAEALNPAL GYYLSTQTKV SPVTRGILIN WLIEVHFKFH LMHETLYLTM NLLDRYLSQV PVQKNEMQMI GLTALLLASK YEDYWHPRIK
501: DLISISAESY TRQQILGMER IMLKQLKFRL NEATPYVFML RFLKAARSNK KLEQLAFYLI ELCLVEYEAL KFKPSLLCAS AIYVARCTLR MNPVWTPLLN
601: NHTHYNVSQM EDCSDMILRF HKAAKTGKLR VTYDKYMSPD RSNIALLKPL AKLPL
101: SNLGGNTLRP ALPGNNTVKW KGVKCSNPQR ISVGSTRVND TSLKKSTKVN ESKRITEVGN NGIYKTGHKI IKNRTLSLES TAGGTRKSLP VFKRTSLTDK
201: TTKKVVINIL MILENVSSLD SKQLGQGPAS KVGNRALPQL SSTRSYTWRT RTSVGSIPSD LNNQSKNNVR IRRKSIKIQT TLKTSLQNRS PLKKPPVGRR
301: KSGSVSSIPS TEEAASALSL PEQVETKGLK EDIQEGSSSN EKTDAVTKVL DVTARPKSKR RKSFTSLLVT GLKFDGKNNE TELKEKLPSI DDESNQLEVA
401: EYVDDIYQFY WTAEALNPAL GYYLSTQTKV SPVTRGILIN WLIEVHFKFH LMHETLYLTM NLLDRYLSQV PVQKNEMQMI GLTALLLASK YEDYWHPRIK
501: DLISISAESY TRQQILGMER IMLKQLKFRL NEATPYVFML RFLKAARSNK KLEQLAFYLI ELCLVEYEAL KFKPSLLCAS AIYVARCTLR MNPVWTPLLN
601: NHTHYNVSQM EDCSDMILRF HKAAKTGKLR VTYDKYMSPD RSNIALLKPL AKLPL
001: MAFAKAPRLS RDDILGNRVS TRSFKIFSDN QKTDPASTIG TSQKKTRIPL RRKSVTISNG LGATSNTNNM KKENSRITGK GKSSIENWEE YTKVTRKALA
101: DLSNLGGNTL RIPTLCGSST MKWKGVKMAN PKRVSVGPTR ANNISVKKST KENVSKRTTE LGNNNLYKTG QKFIKNKTLS LGSTAGGTRK SLPTLKRTSL
201: TDKSLKKFNV SGLNSKQLGQ GLASKASNQA VPQLSSAGTY TWKTRTSVGS IQSDGNKQSK NNVRFVRKSI KIQTTVKTSL QNRSSLKKPP VGRSKSRSIS
301: SIPSSAVAST LSLPEKVETK CLEEDTQGES SSSGNKDPTT KVLDVTAKPK SKRRKSFTSL LVNGSKFDEK NGETTEPEKL PSIDDESNQL EVAEYVDDIY
401: QFYWTAEALN PALGHYLSAH AEVSPVTRGI LINWLIEVHF KFDLMHETLY LTMDLLDRYL SQVPIHKNEM QLIGLTALLL ASKYEDYWHP RIKDLISISA
501: ESYTREQILG MERSMLKQLK FRLNAPTPYV FMLRFLKAAQ SNKKLEQLAF YLIELCLVEY EALKYKPSLL CASAIYVARC TLHMTPVWTS LLNNHTHYNV
601: SQMKDCSDMI LRFHKAAKTG NLRVTYEKYI NPDRSNVAVL KPLDKLPL
101: DLSNLGGNTL RIPTLCGSST MKWKGVKMAN PKRVSVGPTR ANNISVKKST KENVSKRTTE LGNNNLYKTG QKFIKNKTLS LGSTAGGTRK SLPTLKRTSL
201: TDKSLKKFNV SGLNSKQLGQ GLASKASNQA VPQLSSAGTY TWKTRTSVGS IQSDGNKQSK NNVRFVRKSI KIQTTVKTSL QNRSSLKKPP VGRSKSRSIS
301: SIPSSAVAST LSLPEKVETK CLEEDTQGES SSSGNKDPTT KVLDVTAKPK SKRRKSFTSL LVNGSKFDEK NGETTEPEKL PSIDDESNQL EVAEYVDDIY
401: QFYWTAEALN PALGHYLSAH AEVSPVTRGI LINWLIEVHF KFDLMHETLY LTMDLLDRYL SQVPIHKNEM QLIGLTALLL ASKYEDYWHP RIKDLISISA
501: ESYTREQILG MERSMLKQLK FRLNAPTPYV FMLRFLKAAQ SNKKLEQLAF YLIELCLVEY EALKYKPSLL CASAIYVARC TLHMTPVWTS LLNNHTHYNV
601: SQMKDCSDMI LRFHKAAKTG NLRVTYEKYI NPDRSNVAVL KPLDKLPL
Arabidopsis Description
CYCB3;1CYCB3 [Source:UniProtKB/TrEMBL;Acc:A0A178W969]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.