Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G16330.1 | CDX87155 | AT5G23810.1 | 20706207 |
| AT1G16330.1 | CDY16869 | AT5G23810.1 | 20706207 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra026065.1-P | Field mustard | nucleus | 78.77 | 90.91 |
| CDY35083 | Canola | cytosol, endoplasmic reticulum, nucleus | 90.07 | 86.37 |
| CDX96819 | Canola | nucleus | 82.71 | 74.88 |
| CDX83953 | Canola | nucleus | 82.71 | 73.74 |
| AT1G16330.1 | Thale cress | nucleus | 80.14 | 72.22 |
| CDY31481 | Canola | nucleus | 16.95 | 45.62 |
| VIT_19s0085g00690.t01 | Wine grape | nucleus | 44.35 | 42.88 |
| KRH44849 | Soybean | nucleus | 45.89 | 36.17 |
| CDY26816 | Canola | nucleus | 24.49 | 35.14 |
| CDY29520 | Canola | nucleus | 24.49 | 34.88 |
| CDY62475 | Canola | nucleus | 20.89 | 34.76 |
| CDY30357 | Canola | nucleus | 24.32 | 34.72 |
| CDX72551 | Canola | nucleus | 23.8 | 34.66 |
| CDY69551 | Canola | nucleus | 21.06 | 34.65 |
| CDX96631 | Canola | nucleus | 24.32 | 34.63 |
| CDY33634 | Canola | nucleus | 24.14 | 34.56 |
| CDY67210 | Canola | nucleus | 23.97 | 34.48 |
| CDX85942 | Canola | nucleus | 23.46 | 33.58 |
| CDY11354 | Canola | plastid | 24.14 | 32.56 |
| CDY29184 | Canola | nucleus | 22.95 | 31.98 |
| CDX88261 | Canola | nucleus | 23.46 | 31.86 |
| CDY07838 | Canola | nucleus | 22.77 | 31.82 |
| CDX87612 | Canola | nucleus | 23.29 | 31.55 |
| CDX80988 | Canola | plastid | 23.12 | 31.54 |
| CDX69311 | Canola | nucleus | 22.6 | 31.5 |
| CDX68105 | Canola | nucleus | 21.23 | 31.39 |
| CDX75659 | Canola | nucleus | 22.77 | 31.07 |
| CDY06752 | Canola | nucleus | 15.07 | 30.88 |
| Solyc07g066660.2.1 | Tomato | nucleus | 38.87 | 30.72 |
| CDY66770 | Canola | nucleus | 18.32 | 29.56 |
| CDY06757 | Canola | nucleus, plastid | 18.15 | 29.2 |
| CDY23653 | Canola | nucleus | 17.29 | 28.29 |
| CDY48212 | Canola | nucleus | 18.15 | 28.12 |
| CDY22369 | Canola | nucleus | 16.78 | 27.92 |
| CDY47596 | Canola | nucleus | 17.29 | 27.82 |
| CDY61993 | Canola | nucleus | 17.81 | 27.59 |
| CDY17039 | Canola | nucleus | 17.12 | 27.55 |
| CDY62408 | Canola | nucleus, plasma membrane, plastid | 9.93 | 27.49 |
| CDY17091 | Canola | nucleus | 16.78 | 27.37 |
| CDY41784 | Canola | plastid | 15.75 | 27.06 |
| CDX88368 | Canola | plastid | 17.29 | 26.58 |
| CDY47595 | Canola | nucleus, plastid | 16.78 | 26.42 |
| CDY17037 | Canola | nucleus, plastid | 16.44 | 26.37 |
| CDX79389 | Canola | plastid | 19.52 | 26.33 |
| CDX67944 | Canola | plastid | 19.35 | 26.16 |
| CDX87520 | Canola | nucleus | 16.95 | 25.65 |
| CDX81722 | Canola | nucleus, plastid | 17.64 | 25.56 |
| CDY38664 | Canola | nucleus, plastid | 19.86 | 25.49 |
| CDX92090 | Canola | mitochondrion, nucleus | 15.58 | 25.49 |
| CDY53304 | Canola | plastid | 17.81 | 25.43 |
| CDY37592 | Canola | mitochondrion, plastid | 19.86 | 25.38 |
| CDX87087 | Canola | plastid | 17.98 | 25.18 |
| CDX96836 | Canola | nucleus, plastid | 18.84 | 25.0 |
| CDX85466 | Canola | plastid | 17.98 | 24.88 |
| CDX97090 | Canola | nucleus | 18.49 | 24.77 |
| CDX69768 | Canola | nucleus, plastid | 18.49 | 24.71 |
| CDY39984 | Canola | plastid | 18.84 | 24.55 |
| CDY02719 | Canola | plastid | 17.98 | 24.48 |
| CDY66415 | Canola | nucleus | 18.15 | 24.42 |
| CDY36574 | Canola | mitochondrion, nucleus | 18.15 | 24.31 |
| CDX87305 | Canola | plastid | 19.18 | 24.24 |
| CDY65994 | Canola | plastid | 18.32 | 24.15 |
| CDY25649 | Canola | plastid | 17.81 | 23.8 |
| CDY14091 | Canola | plastid | 24.14 | 21.49 |
| CDY04980 | Canola | nucleus | 23.97 | 19.5 |
| CDY19803 | Canola | golgi, nucleus, plasma membrane, plastid | 18.32 | 10.82 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.2 | GO:A0A078H915 | UniProt:A0A078H915 | EnsemblPlants:CDY33338 | ProteinID:CDY33338 |
| ProteinID:CDY33338.1 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom | InterPro:Cyclin_N | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | EnsemblPlantsGene:GSBRNA2T00054176001 | PFAM:PF00134 | PFAM:PF02984 |
| PIRSF:PIRSF001771 | ScanProsite:PS00292 | PANTHER:PTHR10177 | PANTHER:PTHR10177:SF222 | SMART:SM00385 | SMART:SM01332 |
| SUPFAM:SSF47954 | UniParc:UPI0004EEFDA0 | : | : | : | : |
Description
BnaC05g12450DBnaC05g12450D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H915]
Coordinates
chrLK032312:+:152668..156980
Molecular Weight (calculated)
65356.6 Da
IEP (calculated)
10.446
GRAVY (calculated)
-0.528
Length
584 amino acids
Sequence
(BLAST)
(BLAST)
001: MAFAKAPRLG KDDILGNRAC TRSFKVYTDT QKTDPACKVG AAHKTRIPLR RKSVTISSGA TSNTNNMKKG TSRVTGQNKS SNENSEKYTK VTRKALADLS
101: NVGGNTLRPA LSGSSTMKWK GVKCANPQRI SVGSARVHDI SLKKSTKENV SSFDSKQLGQ GLAGKVSNKA QLSSARSFTW KTRTSVSTIP SDGTNQSKNK
201: VRIARKSIKI QTTVRTSLQN RSPLKKPPVG KSKSQSFLSV PSPEEAASAL SIPEQTETEG PKEDTQGESS SNVKKDSSTK VLDVTARPKS KRRKSFTSLL
301: VTGSKKNDET AQQEKLPNID DESNQLEVAE YVDDIYQFYW TAEALNPALG YYLSTQTKVS PVTRGILINW LIEVHSKFDL MHETLYLTMN LLDRYLSQVP
401: VQKNEMQLIG LTALLLASKY EDYWHPRIKD LISISAETYT REQILGMERT MLKQLKFRLN EATPYVFMLR FLKAAQSNKK LQQLSFYLIE LCLVEYEALK
501: FKPSLLCASA IYVARCTLHM TPVWTALLNS HTHYNVSQMK DCSDMILRFH KAAKTGKLRV TYDKYMKSER SNVAVLKPLD KLPL
101: NVGGNTLRPA LSGSSTMKWK GVKCANPQRI SVGSARVHDI SLKKSTKENV SSFDSKQLGQ GLAGKVSNKA QLSSARSFTW KTRTSVSTIP SDGTNQSKNK
201: VRIARKSIKI QTTVRTSLQN RSPLKKPPVG KSKSQSFLSV PSPEEAASAL SIPEQTETEG PKEDTQGESS SNVKKDSSTK VLDVTARPKS KRRKSFTSLL
301: VTGSKKNDET AQQEKLPNID DESNQLEVAE YVDDIYQFYW TAEALNPALG YYLSTQTKVS PVTRGILINW LIEVHSKFDL MHETLYLTMN LLDRYLSQVP
401: VQKNEMQLIG LTALLLASKY EDYWHPRIKD LISISAETYT REQILGMERT MLKQLKFRLN EATPYVFMLR FLKAAQSNKK LQQLSFYLIE LCLVEYEALK
501: FKPSLLCASA IYVARCTLHM TPVWTALLNS HTHYNVSQMK DCSDMILRFH KAAKTGKLRV TYDKYMKSER SNVAVLKPLD KLPL
001: MAFAKAPRLS RDDILGNRVS TRSFKIFSDN QKTDPASTIG TSQKKTRIPL RRKSVTISNG LGATSNTNNM KKENSRITGK GKSSIENWEE YTKVTRKALA
101: DLSNLGGNTL RIPTLCGSST MKWKGVKMAN PKRVSVGPTR ANNISVKKST KENVSKRTTE LGNNNLYKTG QKFIKNKTLS LGSTAGGTRK SLPTLKRTSL
201: TDKSLKKFNV SGLNSKQLGQ GLASKASNQA VPQLSSAGTY TWKTRTSVGS IQSDGNKQSK NNVRFVRKSI KIQTTVKTSL QNRSSLKKPP VGRSKSRSIS
301: SIPSSAVAST LSLPEKVETK CLEEDTQGES SSSGNKDPTT KVLDVTAKPK SKRRKSFTSL LVNGSKFDEK NGETTEPEKL PSIDDESNQL EVAEYVDDIY
401: QFYWTAEALN PALGHYLSAH AEVSPVTRGI LINWLIEVHF KFDLMHETLY LTMDLLDRYL SQVPIHKNEM QLIGLTALLL ASKYEDYWHP RIKDLISISA
501: ESYTREQILG MERSMLKQLK FRLNAPTPYV FMLRFLKAAQ SNKKLEQLAF YLIELCLVEY EALKYKPSLL CASAIYVARC TLHMTPVWTS LLNNHTHYNV
601: SQMKDCSDMI LRFHKAAKTG NLRVTYEKYI NPDRSNVAVL KPLDKLPL
101: DLSNLGGNTL RIPTLCGSST MKWKGVKMAN PKRVSVGPTR ANNISVKKST KENVSKRTTE LGNNNLYKTG QKFIKNKTLS LGSTAGGTRK SLPTLKRTSL
201: TDKSLKKFNV SGLNSKQLGQ GLASKASNQA VPQLSSAGTY TWKTRTSVGS IQSDGNKQSK NNVRFVRKSI KIQTTVKTSL QNRSSLKKPP VGRSKSRSIS
301: SIPSSAVAST LSLPEKVETK CLEEDTQGES SSSGNKDPTT KVLDVTAKPK SKRRKSFTSL LVNGSKFDEK NGETTEPEKL PSIDDESNQL EVAEYVDDIY
401: QFYWTAEALN PALGHYLSAH AEVSPVTRGI LINWLIEVHF KFDLMHETLY LTMDLLDRYL SQVPIHKNEM QLIGLTALLL ASKYEDYWHP RIKDLISISA
501: ESYTREQILG MERSMLKQLK FRLNAPTPYV FMLRFLKAAQ SNKKLEQLAF YLIELCLVEY EALKYKPSLL CASAIYVARC TLHMTPVWTS LLNNHTHYNV
601: SQMKDCSDMI LRFHKAAKTG NLRVTYEKYI NPDRSNVAVL KPLDKLPL
Arabidopsis Description
CYCB3;1CYCB3 [Source:UniProtKB/TrEMBL;Acc:A0A178W969]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.