Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- endoplasmic reticulum 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX69768 | Canola | nucleus, plastid | 94.72 | 94.51 |
| AT5G11300.1 | Thale cress | plastid | 83.26 | 83.26 |
| CDX87087 | Canola | plastid | 61.93 | 64.75 |
| VIT_04s0008g04260.t01 | Wine grape | nucleus, plastid | 49.31 | 53.62 |
| CDY61993 | Canola | nucleus | 45.41 | 52.52 |
| CDY48212 | Canola | nucleus | 44.5 | 51.46 |
| CDY53304 | Canola | plastid | 46.79 | 49.88 |
| KRH52524 | Soybean | nucleus | 53.21 | 49.47 |
| KRH16044 | Soybean | nucleus | 52.29 | 49.46 |
| CDX81722 | Canola | nucleus, plastid | 45.41 | 49.13 |
| CDY06752 | Canola | nucleus | 31.88 | 48.77 |
| CDY66415 | Canola | nucleus | 47.94 | 48.16 |
| CDY36574 | Canola | mitochondrion, nucleus | 47.94 | 47.94 |
| KRH61850 | Soybean | nucleus | 52.75 | 47.13 |
| KRH05060 | Soybean | nucleus | 49.54 | 47.06 |
| CDX96836 | Canola | nucleus, plastid | 47.48 | 47.05 |
| Solyc06g065680.2.1 | Tomato | nucleus, plastid | 50.46 | 46.32 |
| CDX79389 | Canola | plastid | 45.87 | 46.19 |
| CDX67944 | Canola | plastid | 45.18 | 45.6 |
| CDY37592 | Canola | mitochondrion, plastid | 47.48 | 45.3 |
| CDY38664 | Canola | nucleus, plastid | 47.25 | 45.27 |
| CDY39984 | Canola | plastid | 45.64 | 44.42 |
| PGSC0003DMT400067117 | Potato | plastid | 49.31 | 43.26 |
| CDY22369 | Canola | nucleus | 34.63 | 43.02 |
| CDX87305 | Canola | plastid | 45.41 | 42.86 |
| CDY17037 | Canola | nucleus, plastid | 35.55 | 42.58 |
| CDY17091 | Canola | nucleus | 34.86 | 42.46 |
| CDY47595 | Canola | nucleus, plastid | 35.78 | 42.05 |
| CDY62408 | Canola | nucleus, plasma membrane, plastid | 19.95 | 41.23 |
| CDY41784 | Canola | plastid | 31.42 | 40.29 |
| CDX88368 | Canola | plastid | 35.09 | 40.26 |
| CDY31481 | Canola | nucleus | 19.95 | 40.09 |
| CDY23653 | Canola | nucleus | 32.8 | 40.06 |
| CDX87520 | Canola | nucleus | 35.32 | 39.9 |
| CDY47596 | Canola | nucleus | 32.11 | 38.57 |
| CDY06757 | Canola | nucleus, plastid | 32.11 | 38.57 |
| CDY66770 | Canola | nucleus | 31.88 | 38.4 |
| CDX85466 | Canola | plastid | 37.16 | 38.39 |
| CDY17039 | Canola | nucleus | 31.88 | 38.29 |
| CDY02719 | Canola | plastid | 37.16 | 37.76 |
| CDX92090 | Canola | mitochondrion, nucleus | 30.28 | 36.97 |
| CDY65994 | Canola | plastid | 36.47 | 35.89 |
| CDY25649 | Canola | plastid | 35.78 | 35.7 |
| CDX85942 | Canola | nucleus | 28.21 | 30.15 |
| CDY26816 | Canola | nucleus | 27.98 | 29.98 |
| CDX72551 | Canola | nucleus | 27.52 | 29.93 |
| CDY29184 | Canola | nucleus | 28.67 | 29.83 |
| CDY07838 | Canola | nucleus | 28.44 | 29.67 |
| CDY30357 | Canola | nucleus | 27.75 | 29.58 |
| CDX96631 | Canola | nucleus | 27.75 | 29.51 |
| CDY62475 | Canola | nucleus | 23.62 | 29.34 |
| CDY67210 | Canola | nucleus | 27.29 | 29.31 |
| CDY29520 | Canola | nucleus | 27.52 | 29.27 |
| CDY33634 | Canola | nucleus | 27.29 | 29.17 |
| CDY69551 | Canola | nucleus | 23.62 | 29.01 |
| CDX88261 | Canola | nucleus | 28.21 | 28.6 |
| CDX87612 | Canola | nucleus | 28.21 | 28.54 |
| CDX68105 | Canola | nucleus | 25.46 | 28.1 |
| CDY19803 | Canola | golgi, nucleus, plasma membrane, plastid | 61.7 | 27.2 |
| CDX69311 | Canola | nucleus | 25.46 | 26.49 |
| CDX75659 | Canola | nucleus | 25.23 | 25.7 |
| CDY11354 | Canola | plastid | 25.0 | 25.17 |
| CDX80988 | Canola | plastid | 24.54 | 25.0 |
| CDY33338 | Canola | nucleus | 24.77 | 18.49 |
| CDY35083 | Canola | cytosol, endoplasmic reticulum, nucleus | 24.54 | 17.57 |
| CDX96819 | Canola | nucleus | 25.23 | 17.05 |
| CDX83953 | Canola | nucleus | 25.23 | 16.79 |
| CDY14091 | Canola | plastid | 24.54 | 16.31 |
| CDY04980 | Canola | nucleus | 24.31 | 14.76 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.1 | GO:A0A078E4X9 | EnsemblPlants:CDX97090 | ProteinID:CDX97090 | ProteinID:CDX97090.1 |
| InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom | InterPro:Cyclin_N | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | EnsemblPlantsGene:GSBRNA2T00104070001 | PFAM:PF00134 | PFAM:PF02984 | PIRSF:PIRSF001771 |
| ScanProsite:PS00292 | PANTHER:PTHR10177 | PANTHER:PTHR10177:SF212 | SMART:SM00385 | SMART:SM01332 | SUPFAM:SSF47954 |
| UniParc:UPI0004EE2A26 | : | : | : | : | : |
Description
BnaC09g45350D
Coordinates
chrLK031897:-:588890..592408
Molecular Weight (calculated)
48750.4 Da
IEP (calculated)
5.386
GRAVY (calculated)
-0.254
Length
436 amino acids
Sequence
(BLAST)
(BLAST)
001: MDCSSSMHPN ANKENVSTSD VEGGFGRITR SRAKKALGGG VSIPPTKPSF KQQKKRSVLQ DVSNTSAGNI YSDLLGGGNI KVTRKSIKQC KKAAKGGADV
101: AMEILDDMHT EKSKLAEDLS KIRMAESQYA SLSISKDEEI TEQQEDGSGA MDFCQVVDID SNDKDPQCCS LYAADIYDNI NVAELQPRPL ANYMELVQRD
201: IDPAMRRILI DWLVEVSEDY NLVPDTLYLT VNLIDRFLSN SCIERHRLQL LGVTCMLIAS KYEELSAPPV EEFCCITANT YTRPEVLSME IQVLNFVQFK
301: LCVPTTKTFL RRFLRAAQAS YKSPLVEMEF LANYLAELTL VEYNFLRFLP SLVAASAVFL ARWTLDQTED PWNPTLQHYT RYDVAELKTA VLAMEDLQLN
401: TSGCTLTATR EKYNQAKFKS VAKLASPKRV APLFSG
101: AMEILDDMHT EKSKLAEDLS KIRMAESQYA SLSISKDEEI TEQQEDGSGA MDFCQVVDID SNDKDPQCCS LYAADIYDNI NVAELQPRPL ANYMELVQRD
201: IDPAMRRILI DWLVEVSEDY NLVPDTLYLT VNLIDRFLSN SCIERHRLQL LGVTCMLIAS KYEELSAPPV EEFCCITANT YTRPEVLSME IQVLNFVQFK
301: LCVPTTKTFL RRFLRAAQAS YKSPLVEMEF LANYLAELTL VEYNFLRFLP SLVAASAVFL ARWTLDQTED PWNPTLQHYT RYDVAELKTA VLAMEDLQLN
401: TSGCTLTATR EKYNQAKFKS VAKLASPKRV APLFSG
001: MYCSSSMHPN ANKENISTSD VQESFVRITR SRAKKAMGRG VSIPPTKPSF KQQKRRAVLK DVSNTSADII YSELRKGGNI KANRKCLKEP KKAAKEGANS
101: AMDILVDMHT EKSKLAEDLS KIRMAEAQDV SLSNFKDEEI TEQQEDGSGV MELLQVVDID SNVEDPQCCS LYAADIYDNI HVAELQQRPL ANYMELVQRD
201: IDPDMRKILI DWLVEVSDDY KLVPDTLYLT VNLIDRFLSN SYIERQRLQL LGVSCMLIAS KYEELSAPGV EEFCFITANT YTRPEVLSME IQILNFVHFR
301: LSVPTTKTFL RRFIKAAQAS YKVPFIELEY LANYLAELTL VEYSFLRFLP SLIAASAVFL ARWTLDQTDH PWNPTLQHYT RYEVAELKNT VLAMEDLQLN
401: TSGCTLAATR EKYNQPKFKS VAKLTSPKRV TSLFSR
101: AMDILVDMHT EKSKLAEDLS KIRMAEAQDV SLSNFKDEEI TEQQEDGSGV MELLQVVDID SNVEDPQCCS LYAADIYDNI HVAELQQRPL ANYMELVQRD
201: IDPDMRKILI DWLVEVSDDY KLVPDTLYLT VNLIDRFLSN SYIERQRLQL LGVSCMLIAS KYEELSAPGV EEFCFITANT YTRPEVLSME IQILNFVHFR
301: LSVPTTKTFL RRFIKAAQAS YKVPFIELEY LANYLAELTL VEYSFLRFLP SLIAASAVFL ARWTLDQTDH PWNPTLQHYT RYEVAELKNT VLAMEDLQLN
401: TSGCTLAATR EKYNQPKFKS VAKLTSPKRV TSLFSR
Arabidopsis Description
CYCA2-2Cyclin-A2-2 [Source:UniProtKB/Swiss-Prot;Acc:Q147G5]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.