Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY06757 | Canola | nucleus, plastid | 95.3 | 95.04 |
| CDY23653 | Canola | nucleus | 87.29 | 88.52 |
| CDY47596 | Canola | nucleus | 87.57 | 87.33 |
| CDY17039 | Canola | nucleus | 86.46 | 86.23 |
| AT1G47210.2 | Thale cress | nucleus | 85.64 | 83.33 |
| CDY06752 | Canola | nucleus | 60.5 | 76.84 |
| CDY22369 | Canola | nucleus | 69.89 | 72.08 |
| CDY17091 | Canola | nucleus | 70.72 | 71.51 |
| CDY17037 | Canola | nucleus, plastid | 71.27 | 70.88 |
| CDY47595 | Canola | nucleus, plastid | 71.82 | 70.08 |
| AT1G47220.1 | Thale cress | nucleus | 62.43 | 69.11 |
| KRH52056 | Soybean | nucleus | 37.02 | 63.51 |
| VIT_18s0001g09580.t01 | Wine grape | nucleus, plastid | 61.88 | 61.37 |
| PGSC0003DMT400055428 | Potato | nucleus | 60.22 | 59.24 |
| Solyc12g088530.1.1 | Tomato | nucleus | 57.73 | 59.04 |
| Solyc04g078310.2.1 | Tomato | nucleus | 59.94 | 58.49 |
| PGSC0003DMT400030222 | Potato | nucleus | 56.63 | 57.91 |
| PGSC0003DMT400030176 | Potato | nucleus | 56.63 | 57.58 |
| OQU91386 | Sorghum | nucleus | 41.44 | 57.47 |
| GSMUA_Achr10P... | Banana | nucleus | 49.72 | 56.78 |
| Solyc12g088520.1.1 | Tomato | nucleus | 54.14 | 55.21 |
| Solyc12g088500.1.1 | Tomato | nucleus | 53.59 | 54.8 |
| KRH61375 | Soybean | nucleus | 49.45 | 54.74 |
| KRH15427 | Soybean | nucleus, plastid | 54.97 | 54.67 |
| Solyc12g088470.1.1 | Tomato | nucleus | 54.14 | 54.44 |
| KRH61369 | Soybean | nucleus | 48.9 | 54.13 |
| KRH05614 | Soybean | nucleus | 54.7 | 53.95 |
| KRH52055 | Soybean | nucleus | 52.49 | 53.07 |
| KRH61371 | Soybean | nucleus | 50.55 | 52.44 |
| TraesCS4D01G076900.1 | Wheat | nucleus | 53.59 | 52.43 |
| TraesCS4B01G078300.1 | Wheat | nucleus | 53.31 | 52.02 |
| GSMUA_Achr2P21530_001 | Banana | cytosol, nucleus, plastid | 40.88 | 51.75 |
| HORVU4Hr1G013320.1 | Barley | nucleus | 53.31 | 51.74 |
| TraesCS4A01G236700.2 | Wheat | plastid | 52.76 | 50.93 |
| Zm00001d033365_P002 | Maize | nucleus | 51.93 | 50.54 |
| GSMUA_Achr6P11130_001 | Banana | nucleus | 54.14 | 50.13 |
| KRH61373 | Soybean | nucleus, plastid | 51.66 | 49.87 |
| GSMUA_Achr2P21520_001 | Banana | nucleus | 48.62 | 48.89 |
| TraesCS5B01G078200.1 | Wheat | plastid | 50.28 | 48.28 |
| TraesCS5D01G084700.1 | Wheat | nucleus | 50.28 | 48.15 |
| TraesCS5A01G072000.1 | Wheat | plastid | 50.0 | 48.14 |
| Zm00001d013744_P001 | Maize | nucleus | 46.13 | 46.78 |
| Os12t0581800-01 | Rice | nucleus, plastid | 48.9 | 45.97 |
| TraesCS4D01G253200.1 | Wheat | nucleus | 29.28 | 43.44 |
| Zm00001d030849_P001 | Maize | nucleus | 50.55 | 43.26 |
| EES16237 | Sorghum | nucleus, plastid | 50.55 | 42.76 |
| TraesCS4B01G254000.1 | Wheat | nucleus | 42.54 | 40.96 |
| Zm00001d041334_P001 | Maize | nucleus, plastid | 48.9 | 40.5 |
| HORVU5Hr1G018820.2 | Barley | nucleus, plastid | 50.28 | 40.09 |
| TraesCS4D01G253900.1 | Wheat | nucleus | 41.99 | 40.0 |
| TraesCS4A01G050700.1 | Wheat | nucleus | 41.71 | 39.74 |
| CDY61993 | Canola | nucleus | 41.16 | 39.52 |
| EER95303 | Sorghum | nucleus, plastid | 41.44 | 39.37 |
| CDY48212 | Canola | nucleus | 40.61 | 38.99 |
| CDY62408 | Canola | nucleus, plasma membrane, plastid | 22.38 | 38.39 |
| CDY53304 | Canola | plastid | 42.54 | 37.65 |
| CDY41784 | Canola | plastid | 35.36 | 37.65 |
| CDX88368 | Canola | plastid | 38.95 | 37.11 |
| TraesCS4A01G051300.1 | Wheat | nucleus | 35.08 | 37.03 |
| CDX81722 | Canola | nucleus, plastid | 41.16 | 36.97 |
| CDX87520 | Canola | nucleus | 38.95 | 36.53 |
| CDY31481 | Canola | nucleus | 21.82 | 36.41 |
| TraesCS4B01G253100.1 | Wheat | nucleus | 33.98 | 36.07 |
| CDX85466 | Canola | plastid | 41.71 | 35.78 |
| CDY36574 | Canola | mitochondrion, nucleus | 43.09 | 35.78 |
| CDX92090 | Canola | mitochondrion, nucleus | 35.08 | 35.57 |
| CDX87087 | Canola | plastid | 40.88 | 35.49 |
| CDY66415 | Canola | nucleus | 42.54 | 35.48 |
| CDY02719 | Canola | plastid | 41.71 | 35.2 |
| CDX96836 | Canola | nucleus, plastid | 42.54 | 35.0 |
| CDX79389 | Canola | plastid | 40.61 | 33.95 |
| HORVU4Hr1G069310.3 | Barley | nucleus | 38.67 | 33.73 |
| CDX67944 | Canola | plastid | 40.06 | 33.56 |
| CDY65994 | Canola | plastid | 40.61 | 33.18 |
| CDY39984 | Canola | plastid | 40.61 | 32.81 |
| CDY25649 | Canola | plastid | 39.5 | 32.72 |
| CDY38664 | Canola | nucleus, plastid | 40.88 | 32.53 |
| CDY37592 | Canola | mitochondrion, plastid | 40.61 | 32.17 |
| CDX87305 | Canola | plastid | 40.88 | 32.03 |
| CDX97090 | Canola | nucleus | 38.4 | 31.88 |
| CDY62475 | Canola | nucleus | 30.11 | 31.05 |
| CDX69768 | Canola | nucleus, plastid | 37.29 | 30.89 |
| CDY69551 | Canola | nucleus | 30.11 | 30.7 |
| Os03t0607600-00 | Rice | nucleus | 49.72 | 29.61 |
| CDX72551 | Canola | nucleus | 32.6 | 29.43 |
| CDY11354 | Canola | plastid | 34.25 | 28.64 |
| Zm00001d048127_P001 | Maize | plastid | 37.85 | 28.6 |
| CDY67210 | Canola | nucleus | 32.04 | 28.57 |
| CDX80988 | Canola | plastid | 33.7 | 28.5 |
| CDY29184 | Canola | nucleus | 32.6 | 28.16 |
| CDY26816 | Canola | nucleus | 31.22 | 27.76 |
| CDY30357 | Canola | nucleus | 31.22 | 27.63 |
| CDY07838 | Canola | nucleus | 31.77 | 27.51 |
| CDX96631 | Canola | nucleus | 30.94 | 27.32 |
| CDX85942 | Canola | nucleus | 30.66 | 27.21 |
| CDY33634 | Canola | nucleus | 30.66 | 27.21 |
| Os03t0208700-00 | Rice | nucleus | 30.39 | 26.89 |
| CDY29520 | Canola | nucleus | 29.56 | 26.1 |
| CDX88261 | Canola | nucleus | 30.39 | 25.58 |
| CDX87612 | Canola | nucleus | 30.39 | 25.52 |
| CDX68105 | Canola | nucleus | 27.35 | 25.06 |
| CDX69311 | Canola | nucleus | 28.45 | 24.58 |
| CDX75659 | Canola | nucleus | 28.73 | 24.3 |
| CDY33338 | Canola | nucleus | 29.56 | 18.32 |
| CDY14091 | Canola | plastid | 33.15 | 18.29 |
| CDY35083 | Canola | cytosol, endoplasmic reticulum, nucleus | 29.28 | 17.41 |
| CDY04980 | Canola | nucleus | 33.43 | 16.85 |
| CDX96819 | Canola | nucleus | 29.56 | 16.59 |
| CDX83953 | Canola | nucleus | 29.28 | 16.18 |
| CDY19803 | Canola | golgi, nucleus, plasma membrane, plastid | 40.61 | 14.86 |
| Os03t0208800-00 | Rice | nucleus | 15.19 | 13.85 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.1 | GO:A0A078JK30 | UniProt:A0A078JK30 | EnsemblPlants:CDY66770 | ProteinID:CDY66770 |
| ProteinID:CDY66770.1 | InterPro:Cyclin-A_plant | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom | InterPro:Cyclin_N |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | EnsemblPlantsGene:GSBRNA2T00055715001 | PFAM:PF00134 |
| PFAM:PF02984 | PIRSF:PIRSF001771 | ScanProsite:PS00292 | PANTHER:PTHR10177 | PANTHER:PTHR10177:SF270 | SMART:SM00385 |
| SMART:SM01332 | SUPFAM:SSF47954 | UniParc:UPI0004EF42C0 | SEG:seg | : | : |
Description
BnaCnng52280DBnaCnng52280D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JK30]
Coordinates
chrLK035454:+:11992..14029
Molecular Weight (calculated)
41344.2 Da
IEP (calculated)
8.812
GRAVY (calculated)
-0.283
Length
362 amino acids
Sequence
(BLAST)
(BLAST)
001: MTQQEICVRV TRAAAKRKAM ATEEERVTKK RVVLGELPNL SNVTNLNQKR EVAKPTKSLG AKQRKAAAPP VALAATDDID ARSDDPKMCG PYVSDIYDYL
101: RDMEVKPKNR PLPDYIEKVQ KDVTPTMRGV LVDWLVEVAE EYKLLSETLY LTVSYIDRFL SLKTVNKQRL QLVGVSAMLI ASKYEEITPP KVDDFCYITD
201: NTFSKQDVVK MEADILLALQ FEMGRPTVNS FIRRFTRVAQ EDFKVPHLQL EPLSSYLSEL SILDYKAVKF VPSMLAASAV FLARFIIRPK QHPWNQMLEE
301: YTKYKASDLQ ECVGTIHDLY LSRRGGALQA VRDKYKHHKF QCVATLPVSP ELPVTFWEDV TI
101: RDMEVKPKNR PLPDYIEKVQ KDVTPTMRGV LVDWLVEVAE EYKLLSETLY LTVSYIDRFL SLKTVNKQRL QLVGVSAMLI ASKYEEITPP KVDDFCYITD
201: NTFSKQDVVK MEADILLALQ FEMGRPTVNS FIRRFTRVAQ EDFKVPHLQL EPLSSYLSEL SILDYKAVKF VPSMLAASAV FLARFIIRPK QHPWNQMLEE
301: YTKYKASDLQ ECVGTIHDLY LSRRGGALQA VRDKYKHHKF QCVATLPVSP ELPVTFWEDV TI
001: MTEQEICVRV TRAAAKRKAS TAMGIDGDRV NKKRVVLGEL LNVSNVNLLA NLNQKKETQK PKRNLKPPPA KQIKSAPVAI IDLESKSDID SRSDDPQMCG
101: PYVADIYEYL RQLEVKPKQR PLPDYIEKVQ KDVTPSMRGV LVDWLVEVAE EYKLGSETLY LTVSHIDRFL SLKTVNKQKL QLVGVSAMLI ASKYEEISPP
201: KVDDFCYITD NTFSKQDVVK MEADILLALQ FELGRPTINT FMRRFTRVAQ DDFKVPHLQL EPLCCYLSEL SILDYKTVKF VPSLLAASAV FLARFIIRPK
301: QHPWNQMLEE YTKYKAADLQ VCVGIIHDLY LSRRGGALQA VREKYKHHKF QCVATMPVSP ELPVTFWEDV TI
101: PYVADIYEYL RQLEVKPKQR PLPDYIEKVQ KDVTPSMRGV LVDWLVEVAE EYKLGSETLY LTVSHIDRFL SLKTVNKQKL QLVGVSAMLI ASKYEEISPP
201: KVDDFCYITD NTFSKQDVVK MEADILLALQ FELGRPTINT FMRRFTRVAQ DDFKVPHLQL EPLCCYLSEL SILDYKTVKF VPSLLAASAV FLARFIIRPK
301: QHPWNQMLEE YTKYKAADLQ VCVGIIHDLY LSRRGGALQA VREKYKHHKF QCVATMPVSP ELPVTFWEDV TI
Arabidopsis Description
CYCA3-2Cyclin-A3-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6A9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.