Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G254000.1 | Wheat | nucleus | 70.6 | 77.93 |
| TraesCS4A01G050700.1 | Wheat | nucleus | 70.6 | 77.11 |
| TraesCS4D01G253900.1 | Wheat | nucleus | 69.16 | 75.53 |
| EER95303 | Sorghum | nucleus, plastid | 49.4 | 53.81 |
| KRH52056 | Soybean | nucleus | 27.23 | 53.55 |
| GSMUA_Achr2P21530_001 | Banana | cytosol, nucleus, plastid | 34.46 | 50.0 |
| CDY06752 | Canola | nucleus | 33.01 | 48.07 |
| PGSC0003DMT400030222 | Potato | nucleus | 37.59 | 44.07 |
| VIT_18s0001g09580.t01 | Wine grape | nucleus, plastid | 38.31 | 43.56 |
| Solyc12g088500.1.1 | Tomato | nucleus | 37.11 | 43.5 |
| Solyc12g088470.1.1 | Tomato | nucleus | 37.59 | 43.33 |
| PGSC0003DMT400030176 | Potato | nucleus | 36.87 | 42.98 |
| Solyc12g088520.1.1 | Tomato | nucleus | 36.63 | 42.82 |
| AT5G43080.1 | Thale cress | nucleus | 36.39 | 42.54 |
| Solyc12g088530.1.1 | Tomato | nucleus | 36.14 | 42.37 |
| Solyc04g078310.2.1 | Tomato | nucleus | 37.59 | 42.05 |
| KRH61375 | Soybean | nucleus | 33.01 | 41.9 |
| PGSC0003DMT400055428 | Potato | nucleus | 37.11 | 41.85 |
| CDY22369 | Canola | nucleus | 34.94 | 41.31 |
| KRH15427 | Soybean | nucleus, plastid | 36.14 | 41.21 |
| GSMUA_Achr2P21520_001 | Banana | nucleus | 35.66 | 41.11 |
| AT1G47220.1 | Thale cress | nucleus | 32.29 | 40.98 |
| KRH61369 | Soybean | nucleus | 32.29 | 40.98 |
| Bra033658.1-P | Field mustard | nucleus | 34.94 | 40.73 |
| KRH05614 | Soybean | nucleus | 35.9 | 40.6 |
| HORVU4Hr1G013320.1 | Barley | nucleus | 36.39 | 40.48 |
| KRH61371 | Soybean | nucleus | 33.98 | 40.4 |
| KRH52055 | Soybean | nucleus | 34.7 | 40.22 |
| Os03t0208700-00 | Rice | nucleus | 39.04 | 39.61 |
| VIT_03s0091g00280.t01 | Wine grape | nucleus | 32.53 | 39.59 |
| CDY17091 | Canola | nucleus | 33.98 | 39.39 |
| Zm00001d048127_P001 | Maize | plastid | 45.3 | 39.25 |
| PGSC0003DMT400056625 | Potato | nucleus | 35.42 | 38.68 |
| CDY66770 | Canola | nucleus | 33.73 | 38.67 |
| Bra040793.1-P | Field mustard | nucleus | 33.73 | 38.57 |
| CDY47596 | Canola | nucleus | 33.73 | 38.57 |
| KRH61373 | Soybean | nucleus, plastid | 34.7 | 38.4 |
| Solyc10g049360.1.1 | Tomato | nucleus | 34.94 | 38.36 |
| CDY17039 | Canola | nucleus | 33.49 | 38.29 |
| Bra040710.1-P | Field mustard | nucleus | 34.22 | 38.27 |
| Bra040753.1-P | Field mustard | nucleus, plastid | 33.25 | 38.02 |
| CDY06757 | Canola | nucleus, plastid | 33.25 | 38.02 |
| Bra040792.1-P | Field mustard | nucleus, plastid | 33.25 | 37.91 |
| CDY17037 | Canola | nucleus, plastid | 33.25 | 37.91 |
| CDY47595 | Canola | nucleus, plastid | 33.73 | 37.74 |
| AT1G47210.2 | Thale cress | nucleus | 33.73 | 37.63 |
| Bra032220.1-P | Field mustard | nucleus | 32.05 | 37.25 |
| CDY23653 | Canola | nucleus | 31.81 | 36.97 |
| AT1G47230.2 | Thale cress | nucleus, plastid | 32.53 | 36.49 |
| HORVU5Hr1G018820.2 | Barley | nucleus, plastid | 39.04 | 35.68 |
| HORVU0Hr1G001680.1 | Barley | nucleus | 22.17 | 28.75 |
| HORVU1Hr1G068080.1 | Barley | plastid | 22.89 | 27.78 |
| HORVU3Hr1G114440.21 | Barley | nucleus, plastid | 32.05 | 26.23 |
| HORVU0Hr1G022770.1 | Barley | nucleus, plastid | 17.35 | 25.9 |
| HORVU7Hr1G121820.6 | Barley | nucleus | 24.34 | 24.05 |
| HORVU3Hr1G078880.2 | Barley | nucleus | 25.54 | 23.4 |
| Os03t0208800-00 | Rice | nucleus | 21.93 | 22.92 |
| HORVU1Hr1G068010.7 | Barley | mitochondrion, nucleus | 22.65 | 22.38 |
| HORVU1Hr1G068160.2 | Barley | nucleus, plastid | 23.61 | 22.12 |
| HORVU0Hr1G026010.1 | Barley | nucleus, plastid | 23.61 | 22.12 |
| HORVU0Hr1G001690.16 | Barley | nucleus, peroxisome | 23.13 | 21.92 |
| HORVU2Hr1G096070.2 | Barley | nucleus | 22.41 | 19.75 |
| HORVU3Hr1G040990.2 | Barley | nucleus, plastid | 22.89 | 19.31 |
Protein Annotations
| EnsemblPlants:HORVU4Hr1G069310.3 | EnsemblPlantsGene:HORVU4Hr1G069310 | Gene3D:1.10.472.10 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom | InterPro:Cyclin_N | PANTHER:PTHR10177 |
| PANTHER:PTHR10177:SF231 | PFAM:PF00134 | PFAM:PF02984 | ScanProsite:PS00292 | SEG:seg | SMART:SM00385 |
| SMART:SM01332 | SUPFAM:SSF47954 | UniParc:UPI000B4750B5 | UniProt:A0A287PIC6 | MapMan:13.1.1.1.1 | : |
Description
No Description!
Coordinates
chrchr4H:-:569782117..569784682
Molecular Weight (calculated)
45832.1 Da
IEP (calculated)
8.383
GRAVY (calculated)
-0.304
Length
415 amino acids
Sequence
(BLAST)
(BLAST)
001: PLNACLKTRS AYVPFCLKAK GTPPKPPIEN PKPDAQRNGA TRSSPEAAGG GRGQGEQRQR AAAAAQEAAQ GPGRAPHRLD REQCLGGRGA VEAEDARGGQ
101: GGGRDRKSVA VEEEARRREG SAIAARPAAS RQTDAGAAQA SVGPYVPDID GYLRSLEVEQ LRRPRDDYME AIQKDINATM RGILVDWLVD VVDEFKLLAD
201: TLYLAVSYID RFLTASVVTR DKLQLLGVAS LFVAAKYEEI HVPKMDKFCD ITDGTYTDQQ VVKMEADILK YLNFQMGSPT VRTFLLRFLI SSRGSNCASA
301: KRMELMCIYL AELSLLDYDC IRFLPSVIAA ACLFLARFTV SPMTHPWDLT LQENTGYKVS NLKSCILRIH ELQLGRQYLN LKAIRSKYNE RKFGCVSMMA
401: SPEEIPASFL EDLNK
101: GGGRDRKSVA VEEEARRREG SAIAARPAAS RQTDAGAAQA SVGPYVPDID GYLRSLEVEQ LRRPRDDYME AIQKDINATM RGILVDWLVD VVDEFKLLAD
201: TLYLAVSYID RFLTASVVTR DKLQLLGVAS LFVAAKYEEI HVPKMDKFCD ITDGTYTDQQ VVKMEADILK YLNFQMGSPT VRTFLLRFLI SSRGSNCASA
301: KRMELMCIYL AELSLLDYDC IRFLPSVIAA ACLFLARFTV SPMTHPWDLT LQENTGYKVS NLKSCILRIH ELQLGRQYLN LKAIRSKYNE RKFGCVSMMA
401: SPEEIPASFL EDLNK
001: MADEKENCVR MTRAATKRKA SMEAAIDKER INKKRVVLGE LPNLSNIKKS RKATTKQKKK SVSIPTIETL NSDIDTRSDD PQMCGPYVTS IFEYLRQLEV
101: KSRPLVDYIE KIQKDVTSNM RGVLVDWLVE VAEEYKLLSD TLYLAVSYID RFLSLKTVNK QRLQLLGVTS MLIASKYEEI TPPNVDDFCY ITDNTYTKQE
201: IVKMEADILL ALQFELGNPT SNTFLRRFTR VAQEDFEMEF LCSYLSELSM LDYQSVKFLP STVAASAVFL ARFIIRPKQH PWNVMLEEYT RYKAGDLKEC
301: VAMIHDLYLS RKCGALEAIR EKYKQHKFKC VATMPVSPEL PLTVFEDVNI
101: KSRPLVDYIE KIQKDVTSNM RGVLVDWLVE VAEEYKLLSD TLYLAVSYID RFLSLKTVNK QRLQLLGVTS MLIASKYEEI TPPNVDDFCY ITDNTYTKQE
201: IVKMEADILL ALQFELGNPT SNTFLRRFTR VAQEDFEMEF LCSYLSELSM LDYQSVKFLP STVAASAVFL ARFIIRPKQH PWNVMLEEYT RYKAGDLKEC
301: VAMIHDLYLS RKCGALEAIR EKYKQHKFKC VATMPVSPEL PLTVFEDVNI
Arabidopsis Description
CYCA3-1Putative cyclin-A3-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMH5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.