Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY22369 | Canola | nucleus | 83.38 | 84.33 |
| Bra033658.1-P | Field mustard | nucleus | 83.38 | 83.15 |
| AT1G47210.2 | Thale cress | nucleus | 74.65 | 71.24 |
| AT1G47230.2 | Thale cress | nucleus, plastid | 69.58 | 66.76 |
| KRH52056 | Soybean | nucleus | 38.31 | 64.45 |
| AT1G47220.1 | Thale cress | nucleus | 58.87 | 63.91 |
| VIT_18s0001g09580.t01 | Wine grape | nucleus, plastid | 63.1 | 61.37 |
| OQU91386 | Sorghum | nucleus | 44.79 | 60.92 |
| Solyc12g088530.1.1 | Tomato | nucleus | 57.75 | 57.91 |
| GSMUA_Achr10P... | Banana | nucleus | 51.27 | 57.41 |
| KRH61375 | Soybean | nucleus | 52.68 | 57.19 |
| PGSC0003DMT400055428 | Potato | nucleus | 58.87 | 56.79 |
| PGSC0003DMT400030222 | Potato | nucleus | 56.34 | 56.5 |
| KRH05614 | Soybean | nucleus | 58.31 | 56.4 |
| Solyc04g078310.2.1 | Tomato | nucleus | 58.87 | 56.33 |
| KRH15427 | Soybean | nucleus, plastid | 57.46 | 56.04 |
| KRH61369 | Soybean | nucleus | 51.27 | 55.66 |
| PGSC0003DMT400030176 | Potato | nucleus | 55.77 | 55.62 |
| KRH61371 | Soybean | nucleus | 53.8 | 54.73 |
| KRH52055 | Soybean | nucleus | 54.93 | 54.47 |
| Solyc12g088520.1.1 | Tomato | nucleus | 54.37 | 54.37 |
| Solyc12g088500.1.1 | Tomato | nucleus | 54.08 | 54.24 |
| GSMUA_Achr2P21530_001 | Banana | cytosol, nucleus, plastid | 43.66 | 54.2 |
| Solyc12g088470.1.1 | Tomato | nucleus | 54.93 | 54.17 |
| TraesCS4D01G076900.1 | Wheat | nucleus | 56.34 | 54.05 |
| KRH61373 | Soybean | nucleus, plastid | 56.06 | 53.07 |
| HORVU4Hr1G013320.1 | Barley | nucleus | 55.49 | 52.81 |
| GSMUA_Achr6P11130_001 | Banana | nucleus | 58.03 | 52.69 |
| TraesCS4B01G078300.1 | Wheat | nucleus | 54.93 | 52.56 |
| Zm00001d033365_P002 | Maize | nucleus | 54.93 | 52.42 |
| TraesCS4A01G236700.2 | Wheat | plastid | 55.21 | 52.27 |
| GSMUA_Achr2P21520_001 | Banana | nucleus | 50.99 | 50.28 |
| TraesCS5B01G078200.1 | Wheat | plastid | 51.83 | 48.81 |
| TraesCS5D01G084700.1 | Wheat | nucleus | 51.83 | 48.68 |
| TraesCS5A01G072000.1 | Wheat | plastid | 51.55 | 48.67 |
| Zm00001d013744_P001 | Maize | nucleus | 48.45 | 48.18 |
| Os12t0581800-01 | Rice | nucleus, plastid | 51.55 | 47.53 |
| Zm00001d030849_P001 | Maize | nucleus | 55.21 | 46.34 |
| TraesCS4D01G253200.1 | Wheat | nucleus | 31.83 | 46.31 |
| EES16237 | Sorghum | nucleus, plastid | 55.77 | 46.26 |
| Zm00001d041334_P001 | Maize | nucleus, plastid | 53.8 | 43.71 |
| TraesCS4B01G254000.1 | Wheat | nucleus | 43.94 | 41.49 |
| EER95303 | Sorghum | nucleus, plastid | 43.38 | 40.42 |
| TraesCS4D01G253900.1 | Wheat | nucleus | 43.1 | 40.26 |
| TraesCS4A01G050700.1 | Wheat | nucleus | 43.1 | 40.26 |
| HORVU5Hr1G018820.2 | Barley | nucleus, plastid | 51.27 | 40.09 |
| TraesCS4A01G051300.1 | Wheat | nucleus | 37.18 | 38.48 |
| TraesCS4B01G253100.1 | Wheat | nucleus | 36.9 | 38.42 |
| AT1G15570.1 | Thale cress | nucleus, plastid | 47.89 | 37.78 |
| HORVU4Hr1G069310.3 | Barley | nucleus | 42.54 | 36.39 |
| AT1G80370.1 | Thale cress | plastid | 46.48 | 35.79 |
| AT5G25380.4 | Thale cress | plastid | 43.38 | 34.76 |
| AT1G44110.1 | Thale cress | plastid | 42.82 | 33.04 |
| AT5G11300.1 | Thale cress | plastid | 40.56 | 33.03 |
| AT1G77390.1 | Thale cress | plastid | 40.85 | 32.81 |
| Os03t0607600-00 | Rice | nucleus | 52.11 | 30.43 |
| Zm00001d048127_P001 | Maize | plastid | 40.28 | 29.85 |
| Os03t0208700-00 | Rice | nucleus | 33.24 | 28.85 |
| AT2G26760.1 | Thale cress | nucleus | 30.99 | 28.42 |
| AT3G11520.1 | Thale cress | nucleus | 32.11 | 27.54 |
| AT5G06150.1 | Thale cress | nucleus | 32.96 | 26.29 |
| AT1G20590.1 | Thale cress | cytosol, golgi, nucleus, plastid | 18.87 | 25.28 |
| AT4G37490.1 | Thale cress | nucleus | 29.86 | 24.77 |
| AT4G35620.1 | Thale cress | nucleus | 29.58 | 24.48 |
| AT2G17620.1 | Thale cress | nucleus | 28.17 | 23.31 |
| AT1G20610.1 | Thale cress | nucleus | 27.32 | 22.61 |
| AT1G76310.3 | Thale cress | nucleus | 28.17 | 21.79 |
| AT1G34460.5 | Thale cress | cytosol | 21.69 | 15.46 |
| AT1G16330.1 | Thale cress | nucleus | 27.32 | 14.97 |
| Os03t0208800-00 | Rice | nucleus | 15.21 | 13.6 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.1 | EntrezGene:834324 | ProteinID:AED94908.1 | ArrayExpress:AT5G43080 | EnsemblPlantsGene:AT5G43080 |
| RefSeq:AT5G43080 | TAIR:AT5G43080 | RefSeq:AT5G43080-TAIR-G | EnsemblPlants:AT5G43080.1 | TAIR:AT5G43080.1 | ProteinID:BAB08272.1 |
| Symbol:CYCA3;1 | InterPro:Cyclin-A_plant | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom | InterPro:Cyclin_N |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0007049 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0051301 | RefSeq:NP_199122.1 |
| PFAM:PF00134 | PFAM:PF02984 | PIRSF:PIRSF001771 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | ScanProsite:PS00292 | PANTHER:PTHR10177 | PANTHER:PTHR10177:SF270 |
| UniProt:Q9FMH5 | SMART:SM00385 | SMART:SM01332 | SUPFAM:SSF47954 | UniParc:UPI00000AAD89 | SEG:seg |
Description
CYCA3-1Putative cyclin-A3-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMH5]
Coordinates
chr5:+:17292952..17295024
Molecular Weight (calculated)
40957.8 Da
IEP (calculated)
8.240
GRAVY (calculated)
-0.280
Length
355 amino acids
Sequence
(BLAST)
(BLAST)
001: MADEKENCVR MTRAATKRKA SMEAAIDKER INKKRVVLGE LPNLSNIKKS RKATTKQKKK SVSIPTIETL NSDIDTRSDD PQMCGPYVTS IFEYLRQLEV
101: KSRPLVDYIE KIQKDVTSNM RGVLVDWLVE VAEEYKLLSD TLYLAVSYID RFLSLKTVNK QRLQLLGVTS MLIASKYEEI TPPNVDDFCY ITDNTYTKQE
201: IVKMEADILL ALQFELGNPT SNTFLRRFTR VAQEDFEMSH LQMEFLCSYL SELSMLDYQS VKFLPSTVAA SAVFLARFII RPKQHPWNVM LEEYTRYKAG
301: DLKECVAMIH DLYLSRKCGA LEAIREKYKQ HKFKCVATMP VSPELPLTVF EDVNI
101: KSRPLVDYIE KIQKDVTSNM RGVLVDWLVE VAEEYKLLSD TLYLAVSYID RFLSLKTVNK QRLQLLGVTS MLIASKYEEI TPPNVDDFCY ITDNTYTKQE
201: IVKMEADILL ALQFELGNPT SNTFLRRFTR VAQEDFEMSH LQMEFLCSYL SELSMLDYQS VKFLPSTVAA SAVFLARFII RPKQHPWNVM LEEYTRYKAG
301: DLKECVAMIH DLYLSRKCGA LEAIREKYKQ HKFKCVATMP VSPELPLTVF EDVNI
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.