Factsheet for AT5G25380.4

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
nucleus 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX87087	Canola	plastid	72.69	77.22
AT5G11300.1	Thale cress	plastid	67.27	68.35
VIT_04s0008g04260.t01	Wine grape	nucleus, plastid	48.08	53.12
KRH52524	Soybean	nucleus	52.14	49.25
KRH16044	Soybean	nucleus	51.24	49.24
KRH61850	Soybean	nucleus	52.6	47.75
KRH05060	Soybean	nucleus	49.44	47.71
Solyc06g065680.2.1	Tomato	nucleus, plastid	49.89	46.53
AT1G15570.1	Thale cress	nucleus, plastid	46.73	46.0
AT1G80370.1	Thale cress	plastid	47.4	45.55
AT5G43080.1	Thale cress	nucleus	34.76	43.38
PGSC0003DMT400067117	Potato	plastid	48.31	43.06
AT1G47210.2	Thale cress	nucleus	35.21	41.94
AT1G47230.2	Thale cress	nucleus, plastid	34.99	41.89
AT1G47220.1	Thale cress	nucleus	30.02	40.67
AT1G44110.1	Thale cress	plastid	38.83	37.39
AT1G77390.1	Thale cress	plastid	35.89	35.97
Bra036544.1-P	Field mustard	nucleus	73.59	33.03
CDY19803	Canola	golgi, nucleus, plasma membrane, plastid	73.59	32.96
AT2G26760.1	Thale cress	nucleus	26.86	30.75
AT1G20590.1	Thale cress	cytosol, golgi, nucleus, plastid	16.7	27.92
AT2G17620.1	Thale cress	nucleus	26.64	27.51
AT3G11520.1	Thale cress	nucleus	25.28	27.05
AT4G35620.1	Thale cress	nucleus	25.96	26.81
AT5G06150.1	Thale cress	nucleus	26.41	26.29
AT4G37490.1	Thale cress	nucleus	25.06	25.93
AT1G20610.1	Thale cress	nucleus	25.06	25.87
AT1G76310.3	Thale cress	nucleus	25.96	25.05
AT1G16330.1	Thale cress	nucleus	24.83	16.98
AT1G34460.5	Thale cress	cytosol	17.38	15.46

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.1	EntrezGene:832610	ProteinID:AAC98445.1	ProteinID:AED93433.1	ProteinID:ANM70898.1
ArrayExpress:AT5G25380	EnsemblPlantsGene:AT5G25380	RefSeq:AT5G25380	TAIR:AT5G25380	RefSeq:AT5G25380-TAIR-G	EnsemblPlants:AT5G25380.4
ProteinID:CAA83460.1	Symbol:CYCA2;1	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_C-dom	InterPro:Cyclin_N
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0007049	GO:GO:0008150
GO:GO:0009987	GO:GO:0051301	RefSeq:NP_001318646.1	RefSeq:NP_001332473.1	RefSeq:NP_197920.2	PFAM:PF00134
PFAM:PF02984	PIRSF:PIRSF001771	ScanProsite:PS00292	PANTHER:PTHR10177	PANTHER:PTHR10177:SF212	UniProt:Q39071
SMART:SM00385	SMART:SM01332	SUPFAM:SSF47954	UniParc:UPI000237494B	:	:

Description

CYCA2-1Cyclin-A2-1 [Source:UniProtKB/Swiss-Prot;Acc:Q39071]

Coordinates

chr5:+:8815230..8817566

Molecular Weight (calculated)

50339.2 Da

IEP (calculated)

8.438

GRAVY (calculated)

-0.364

Length

443 amino acids

Sequence
(BLAST)

001: MHRASSKHTN AKKEAISTSK IRDNNVRVTR SRAKALGVSN SPSKPAFKHE TKRVARPSNK RMASDNITVC NQKRRAVLKD VTNTLAESII STEGNVKACK
101: RGGKETKQIE EDGLVDVDGE KSKLAEDLSK IRMVESLDAS ASKQKLVDCA EEDRSDVTDC VQIVDIDSGV QDPQFCSLYA ASIYDSINVA ELEQRPSTSY
201: MVQVQRDIDP TMRGILIDWL VEVSEEYKLV SDTLYLTVNL IDRFMSHNYI EKQKLQLLGI TCMLIASKYE EISAPRLEEF CFITDNTYTR LEVLSMEIKV
301: LNSLHFRLSV PTTKTFLRRF IRAAQASDKV PLIEMEYLAN YFAELTLTEY TFLRFLPSLI AASAVFLARW TLDQSNHPWN QTLQHYTRYE TSALKNTVLA
401: MEELQLNTSG STLIAIHTKY NQQKFKRVAT LTSPERVNTL FSR

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.