Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra015671.1-P | Field mustard | plastid | 70.14 | 80.31 |
| CDX87520 | Canola | nucleus | 70.14 | 80.31 |
| CDX88368 | Canola | plastid | 68.55 | 79.74 |
| CDY41784 | Canola | plastid | 59.5 | 77.35 |
| CDY62408 | Canola | nucleus, plasma membrane, plastid | 33.71 | 70.62 |
| Bra022173.1-P | Field mustard | nucleus, plastid | 53.17 | 62.33 |
| CDX92090 | Canola | mitochondrion, nucleus | 50.23 | 62.18 |
| Os05t0237100-01 | Rice | extracellular | 24.21 | 54.31 |
| AT1G44110.1 | Thale cress | plastid | 51.58 | 49.57 |
| VIT_18s0001g02060.t01 | Wine grape | plastid | 54.07 | 48.28 |
| KRH64625 | Soybean | plastid | 50.91 | 46.49 |
| TraesCS1B01G151800.3 | Wheat | nucleus | 37.33 | 46.48 |
| KRH53279 | Soybean | plastid | 50.23 | 46.25 |
| Solyc11g005090.1.1 | Tomato | plastid | 49.55 | 44.69 |
| Os12t0298950-00 | Rice | nucleus | 45.02 | 44.52 |
| PGSC0003DMT400015424 | Potato | plastid | 47.51 | 44.49 |
| KRH17986 | Soybean | plastid | 49.77 | 43.74 |
| Zm00001d032128_P001 | Maize | cytosol | 15.61 | 43.67 |
| KRH16410 | Soybean | plastid | 49.55 | 43.45 |
| Os01t0233100-00 | Rice | nucleus, plastid | 46.83 | 42.16 |
| Os01t0233500-01 | Rice | nucleus, plastid | 47.96 | 41.73 |
| AT1G47220.1 | Thale cress | nucleus | 30.77 | 41.59 |
| GSMUA_Achr5P06960_001 | Banana | nucleus, plastid | 46.83 | 41.4 |
| GSMUA_Achr2P19220_001 | Banana | nucleus, plastid | 46.83 | 41.24 |
| TraesCS3B01G183400.1 | Wheat | plastid | 47.29 | 40.98 |
| TraesCS3D01G164600.1 | Wheat | plastid | 47.29 | 40.98 |
| AT5G43080.1 | Thale cress | nucleus | 32.81 | 40.85 |
| AT1G47230.2 | Thale cress | nucleus, plastid | 34.16 | 40.81 |
| TraesCS3A01G157000.1 | Wheat | plastid | 47.29 | 40.74 |
| TraesCS1D01G134100.2 | Wheat | nucleus, plastid | 43.89 | 40.67 |
| Zm00001d040381_P001 | Maize | plastid | 48.19 | 39.96 |
| KXG21616 | Sorghum | nucleus, plastid | 42.53 | 39.25 |
| AT1G47210.2 | Thale cress | nucleus | 32.35 | 38.44 |
| Zm00001d021353_P002 | Maize | mitochondrion, nucleus | 17.19 | 38.0 |
| AT1G15570.1 | Thale cress | nucleus, plastid | 38.46 | 37.78 |
| Zm00001d009011_P001 | Maize | nucleus, plastid | 41.63 | 36.08 |
| AT5G25380.4 | Thale cress | plastid | 35.97 | 35.89 |
| AT1G80370.1 | Thale cress | plastid | 37.33 | 35.79 |
| AT5G11300.1 | Thale cress | plastid | 34.39 | 34.86 |
| TraesCS1A01G138300.1 | Wheat | nucleus, plastid | 41.18 | 34.67 |
| Zm00001d010404_P001 | Maize | nucleus | 35.52 | 32.37 |
| AT2G26760.1 | Thale cress | nucleus | 27.6 | 31.52 |
| AT4G35620.1 | Thale cress | nucleus | 29.86 | 30.77 |
| AT2G17620.1 | Thale cress | nucleus | 29.19 | 30.07 |
| AT4G37490.1 | Thale cress | nucleus | 27.83 | 28.74 |
| AT3G11520.1 | Thale cress | nucleus | 26.47 | 28.26 |
| AT1G20610.1 | Thale cress | nucleus | 27.38 | 28.21 |
| AT1G20590.1 | Thale cress | cytosol, golgi, nucleus, plastid | 16.74 | 27.92 |
| AT5G06150.1 | Thale cress | nucleus | 26.47 | 26.29 |
| AT1G76310.3 | Thale cress | nucleus | 27.15 | 26.14 |
| AT1G16330.1 | Thale cress | nucleus | 25.11 | 17.13 |
| AT1G34460.5 | Thale cress | cytosol | 19.0 | 16.87 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.1 | EntrezGene:844075 | UniProt:A0A178WDV8 | ProteinID:AAG29191.1 | ProteinID:AEE35972.1 |
| ArrayExpress:AT1G77390 | EnsemblPlantsGene:AT1G77390 | RefSeq:AT1G77390 | TAIR:AT1G77390 | RefSeq:AT1G77390-TAIR-G | EnsemblPlants:AT1G77390.1 |
| TAIR:AT1G77390.1 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom | InterPro:Cyclin_N | GO:GO:0000003 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005737 | GO:GO:0007049 | GO:GO:0007135 | GO:GO:0007140 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0009556 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0051301 | GO:GO:0051321 |
| GO:GO:0051445 | RefSeq:NP_177863.2 | ProteinID:OAP16599.1 | PFAM:PF00134 | PFAM:PF02984 | PIRSF:PIRSF001771 |
| PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009052 |
| PO:PO:0020038 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | ScanProsite:PS00292 | PANTHER:PTHR10177 |
| PANTHER:PTHR10177:SF239 | UniProt:Q9FVX0 | SMART:SM00385 | SMART:SM01332 | SUPFAM:SSF47954 | Symbol:TAM |
| UniParc:UPI00001632E8 | SEG:seg | : | : | : | : |
Description
CYCA1-2TAM [Source:UniProtKB/TrEMBL;Acc:A0A178WDV8]
Coordinates
chr1:-:29081654..29084285
Molecular Weight (calculated)
49640.0 Da
IEP (calculated)
5.723
GRAVY (calculated)
-0.367
Length
442 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSSSRNLSQ ENPIPRPNLA KTRTSLRDVG NRRAPLGDIT NQKNGSRNPS PSSTLVNCSN KIGQSKKAPK PALSRNWNLG ILDSGLPPKP NAKSNIIVPY
101: EDTELLQSDD SLLCSSPALS LDASPTQSDP SISTHDSLTN HVVDYMVEST TDDGNDDDDD EIVNIDSDLM DPQLCASFAC DIYEHLRVSE VNKRPALDYM
201: ERTQSSINAS MRSILIDWLV EVAEEYRLSP ETLYLAVNYV DRYLTGNAIN KQNLQLLGVT CMMIAAKYEE VCVPQVEDFC YITDNTYLRN ELLEMESSVL
301: NYLKFELTTP TAKCFLRRFL RAAQGRKEVP SLLSECLACY LTELSLLDYA MLRYAPSLVA ASAVFLAQYT LHPSRKPWNA TLEHYTSYRA KHMEACVKNL
401: LQLCNEKLSS DVVAIRKKYS QHKYKFAAKK LCPTSLPQEL FL
101: EDTELLQSDD SLLCSSPALS LDASPTQSDP SISTHDSLTN HVVDYMVEST TDDGNDDDDD EIVNIDSDLM DPQLCASFAC DIYEHLRVSE VNKRPALDYM
201: ERTQSSINAS MRSILIDWLV EVAEEYRLSP ETLYLAVNYV DRYLTGNAIN KQNLQLLGVT CMMIAAKYEE VCVPQVEDFC YITDNTYLRN ELLEMESSVL
301: NYLKFELTTP TAKCFLRRFL RAAQGRKEVP SLLSECLACY LTELSLLDYA MLRYAPSLVA ASAVFLAQYT LHPSRKPWNA TLEHYTSYRA KHMEACVKNL
401: LQLCNEKLSS DVVAIRKKYS QHKYKFAAKK LCPTSLPQEL FL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.