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Wheat
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Wheat
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid, nucleus

Predictor Summary:
  • plastid 3
  • mitochondrion 3
  • nucleus 2
Predictors GFP MS/MS Papers
Winner Takes All:nucleus, plastid
Any Predictor:mitochondrion, nucleus, plastid
BaCelLo:plastid
ChloroP:plastid
iPSORT:mitochondrion
MultiLoc:nucleus
PProwler:mitochondrion
TargetP:plastid
WoLF PSORT:mitochondrion
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
TraesCS2A01G281500.1
TraesCS2B01G298800.1
TraesCS2D01G280300.1
TraesCS6A01G189800.1
TraesCS6B01G235200.1
TraesCS6D01G176800.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G44110.1 TraesCS6A01G189800.1 AT5G07300.1 20706207
AT1G44110.1 TraesCS6B01G235200.1 AT5G07300.1 20706207
AT1G44110.1 TraesCS6D01G176800.1 AT5G07300.1 20706207
AT1G44110.1 TraesCS2A01G281500.1 AT5G14170.1 20706207
AT1G44110.1 TraesCS2B01G298800.1 AT5G14170.1 20706207
AT1G44110.1 TraesCS2D01G280300.1 AT5G14170.1 20706207
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS1B01G151800.3 Wheat nucleus 70.65 94.93
TraesCS1A01G138300.1 Wheat nucleus, plastid 91.61 83.24
Os05t0237100-01 Rice extracellular 32.91 79.7
KXG21616 Sorghum nucleus, plastid 61.64 61.38
TraesCS3D01G164600.1 Wheat plastid 60.17 56.27
VIT_18s0001g02080.t01 Wine grape nucleus, plastid 42.35 54.59
GSMUA_Achr5P06960_001 Banana nucleus, plastid 54.93 52.4
GSMUA_Achr2P19220_001 Banana nucleus, plastid 54.93 52.19
Bra032202.1-P Field mustard plastid 44.86 50.71
Bra023606.1-P Field mustard plastid 44.03 50.12
Zm00001d010404_P001 Maize nucleus 50.73 49.9
CDY25649 Canola plastid 45.7 49.89
CDY65994 Canola plastid 45.91 49.44
CDY02719 Canola plastid 44.44 49.42
CDX85466 Canola plastid 43.61 49.29
AT1G44110.1 Thale cress plastid 47.38 49.13
KRH53279 Soybean plastid 49.06 48.75
VIT_18s0001g02060.t01 Wine grape plastid 50.31 48.48
KRH64625 Soybean plastid 48.85 48.14
CDX87520 Canola nucleus 37.74 46.63
Bra015671.1-P Field mustard plastid 37.53 46.37
Solyc11g005090.1.1 Tomato plastid 47.59 46.33
CDX88368 Canola plastid 36.69 46.05
KRH17986 Soybean plastid 48.43 45.92
CDY41784 Canola plastid 32.7 45.88
CDY62408 Canola nucleus, plasma membrane, plastid 20.13 45.5
KRH16410 Soybean plastid 47.59 45.04
PGSC0003DMT400015424 Potato plastid 44.03 44.49
AT1G77390.1 Thale cress plastid 40.67 43.89
TraesCS4D01G253200.1 Wheat nucleus 21.8 42.62
TraesCS4D01G076900.1 Wheat nucleus 32.91 42.43
CDX92090 Canola mitochondrion, nucleus 31.45 42.02
Bra022173.1-P Field mustard nucleus, plastid 33.12 41.91
TraesCS5D01G084700.1 Wheat nucleus 32.49 41.01
TraesCS4D01G253900.1 Wheat nucleus 27.46 34.47
TraesCS3D01G529100.1 Wheat plastid 33.33 31.49
TraesCS5D01G121100.2 Wheat plastid 32.49 30.51
TraesCS7D01G536000.1 Wheat nucleus 25.37 28.88
TraesCS1D01G309300.1 Wheat nucleus, plastid 26.0 28.44
TraesCS1D01G309400.1 Wheat nucleus 25.58 27.92
TraesCS3D01G195200.1 Wheat plastid 23.9 27.6
TraesCS3D01G326600.1 Wheat nucleus 26.21 27.47
TraesCS2D01G401700.1 Wheat nucleus, plastid 24.11 27.32
Protein Annotations
EnsemblPlants:TraesCS1D01G134100.2EnsemblPlantsGene:TraesCS1D01G134100Gene3D:1.10.472.10GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005634InterPro:Cyclin-likeInterPro:Cyclin-like_sfInterPro:Cyclin_C-domInterPro:Cyclin_NPANTHER:PTHR10177
PANTHER:PTHR10177:SF239PFAM:PF00134PFAM:PF02984PIRSF:PIRSF001771ScanProsite:PS00292SEG:seg
SMART:SM00385SMART:SM01332SUPFAM:SSF47954TIGR:cd00043MapMan:13.1.1.1.1:
Description
No Description!
Coordinates
chr1D:-:165473607..165476748
Molecular Weight (calculated)
52874.0 Da
IEP (calculated)
8.237
GRAVY (calculated)
-0.289
Length
477 amino acids
Sequence
(BLAST)
001: MSSRPAGRRS SASATAETAG AKAAKAASLE NRRAALGNLT NVAGGRTGAA DVKSSSSNSV AYVKKGSSAS VPNVNRKVAS ATKPTFDRFE RAISHHGNAL
101: QKENVCRLSV PTLAPHGSWP GLSHDSVSME DDMLTCNSVE SPGPPFLDNA ASSVAASLRR CANDKLPVSD NRDTTVSRWR KHCPTPIEND NIFEIETHCK
201: DPELCSTIAC DIYKHLREAE TKKRPSPDFL ETTQKDIDAS MRAVLIDWLV EVTEEYRLVP ETLYLTVSYI DRYLSSKEIN RDKLQLLGVA CFLIAAKYEE
301: ICPPQVEELC YITDNTYIKD EVLRMEASIL GCLKFEMTAP TGKCFLRRFL HAAQVCHEGP ALHLEFLASY ITELSLLEYS LLCHVPSLIA ASSIFLANFI
401: LKPTKNPWQN TTLSYHTQYK PSTLRDCVKV LHRLFRVGLG SNLPAIREKY SQHKYKFVAK KYCPPSIPAN FFQDASS
Best Arabidopsis Sequence Match ( AT1G44110.1 )
(BLAST)
001: MSNILQNRRS SFSSSTKSSL AKRQAPSSSE NSVKLMPAMT KKRAPLSNIT NQKIASRLQN SDSVHCSNKS AKLKIAPSVC VNASFSSNLQ QSIVPHKVAS
101: SPSKSDDGSV SMDETRSSSD SYKSPQVEYI ENDDVSAVVS IERKALSNLF ITPNSETIDN YCSRDVLSDM KKMDKNQIVN IDSNNGDPQL CATFACDIYK
201: HLRASEAKKR PDVDYMERVQ KDVNSSMRGI LVDWLIEVSE EYRLVPETLY LTVNYIDRYL SGNVISRQKL QLLGVACMMI AAKYEEICAP QVEEFCYITD
301: NTYLKDEVLD MESDVLNYLK FEMTAPTTKC FLRRFVRAAH GVHEAPLMQL ECMANYIAEL SLLEYTMLSH SPSLVAASAI FLAKYILDPT RRPWNSTLQH
401: YTQYKAMELR GCVKDLQRLC STAHGSTLPA VREKYSQHKY KFVAKKFCPS VIPQEFFNNS
Arabidopsis Description
CYCA1-1CYCA1 [Source:UniProtKB/TrEMBL;Acc:A0A178W0H5]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.