Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G114300.2 | Wheat | plastid | 97.44 | 97.63 |
| TraesCS5A01G108500.2 | Wheat | plastid | 96.85 | 96.85 |
| TraesCS3D01G529100.1 | Wheat | plastid | 83.46 | 83.96 |
| Os12t0502300-01 | Rice | nucleus, plastid | 73.03 | 75.71 |
| OQU77084 | Sorghum | nucleus | 66.93 | 69.67 |
| GSMUA_Achr1P14000_001 | Banana | nucleus, plasma membrane, plastid | 33.86 | 69.64 |
| Zm00001d014756_P006 | Maize | nucleus, plastid | 65.75 | 64.11 |
| Bra000822.1-P | Field mustard | nucleus | 41.93 | 56.5 |
| CDY61993 | Canola | nucleus | 41.34 | 55.7 |
| Bra031463.1-P | Field mustard | nucleus | 40.35 | 55.56 |
| CDY48212 | Canola | nucleus | 40.75 | 54.91 |
| GSMUA_Achr3P25340_001 | Banana | nucleus | 54.33 | 50.92 |
| VIT_09s0002g05240.t01 | Wine grape | nucleus | 49.02 | 50.82 |
| CDY53304 | Canola | plastid | 40.35 | 50.12 |
| CDX79389 | Canola | plastid | 42.72 | 50.12 |
| Bra026756.1-P | Field mustard | plastid | 39.76 | 49.39 |
| CDX81722 | Canola | nucleus, plastid | 39.17 | 49.38 |
| CDX67944 | Canola | plastid | 41.93 | 49.31 |
| Bra003563.1-P | Field mustard | plastid | 41.93 | 49.31 |
| CDY66415 | Canola | nucleus | 41.93 | 49.08 |
| CDY36574 | Canola | mitochondrion, nucleus | 41.73 | 48.62 |
| KRH47513 | Soybean | nucleus | 45.28 | 48.32 |
| CDY38664 | Canola | nucleus, plastid | 42.91 | 47.91 |
| KRH44391 | Soybean | nucleus | 44.09 | 47.56 |
| AT1G80370.1 | Thale cress | plastid | 43.11 | 47.51 |
| Bra008477.1-P | Field mustard | plastid | 42.72 | 47.48 |
| CDY37592 | Canola | mitochondrion, plastid | 42.52 | 47.26 |
| CDY39984 | Canola | plastid | 41.54 | 47.1 |
| CDX96836 | Canola | nucleus, plastid | 40.35 | 46.59 |
| Solyc03g120440.1.1 | Tomato | nucleus, plastid | 41.73 | 46.29 |
| AT1G15570.1 | Thale cress | nucleus, plastid | 40.94 | 46.22 |
| PGSC0003DMT400006576 | Potato | nucleus | 42.13 | 46.22 |
| Bra016654.1-P | Field mustard | nucleus, plastid | 40.35 | 46.07 |
| Bra026120.1-P | Field mustard | nucleus | 41.93 | 45.71 |
| CDX87305 | Canola | plastid | 41.34 | 45.45 |
| Bra035186.1-P | Field mustard | plastid | 40.75 | 44.81 |
| TraesCS4D01G076900.1 | Wheat | nucleus | 30.71 | 42.16 |
| TraesCS5D01G084700.1 | Wheat | nucleus | 30.32 | 40.74 |
| TraesCS4D01G253200.1 | Wheat | nucleus | 19.29 | 40.16 |
| TraesCS4D01G253900.1 | Wheat | nucleus | 26.18 | 35.0 |
| TraesCS3D01G164600.1 | Wheat | plastid | 33.27 | 33.14 |
| TraesCS1D01G134100.2 | Wheat | nucleus, plastid | 30.51 | 32.49 |
| TraesCS3D01G195200.1 | Wheat | plastid | 24.21 | 29.78 |
| TraesCS1D01G309300.1 | Wheat | nucleus, plastid | 25.0 | 29.13 |
| TraesCS7D01G536000.1 | Wheat | nucleus | 23.62 | 28.64 |
| TraesCS3D01G326600.1 | Wheat | nucleus | 25.59 | 28.57 |
| TraesCS1D01G309400.1 | Wheat | nucleus | 24.21 | 28.15 |
| TraesCS2D01G401700.1 | Wheat | nucleus, plastid | 22.83 | 27.55 |
Protein Annotations
| EnsemblPlants:TraesCS5D01G121100.2 | EnsemblPlantsGene:TraesCS5D01G121100 | Gene3D:1.10.472.10 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom | InterPro:Cyclin_N | PANTHER:PTHR10177 |
| PANTHER:PTHR10177:SF239 | PFAM:PF00134 | PFAM:PF02984 | PIRSF:PIRSF001771 | SMART:SM00385 | SMART:SM01332 |
| SUPFAM:SSF47954 | TIGR:cd00043 | MapMan:13.1.1.1.1 | : | : | : |
Description
No Description!
Coordinates
chr5D:-:173587054..173590542
Molecular Weight (calculated)
57192.5 Da
IEP (calculated)
8.817
GRAVY (calculated)
-0.385
Length
508 amino acids
Sequence
(BLAST)
(BLAST)
001: MASRKDIPVL IACQGPSGRV TRAQVANNSR RCGVAHPALV PVRTEQKPTV KGKTKRGALD ENTCVSAVAS APHPKRRAVL KDVTNISCAN SYRNCTAVTK
101: LQSRPTQKVG QNPSKNKQRS KKVPKPPLPA VSATSFVNDC HNVEEAQKEE LSPPKEEPTA LLENKGSLLQ NTERNRESGF HEAFFQGRIT RDKFETANSN
201: TGDYAGLNII DIDKDNGNPQ MCVSYAAEIY TNLMAAELIR RPKSNYMETL QRDITKGMRG ILIDWLVEVS EEYKLVPDTL YLTVYLIDQF LSWKYIERQK
301: LQLLGITSML IASKYEEICA PRVEEFCFIT DNTYTKDQVL KMECQVLNGL GYNLSVPTTK TFLRRFLRAA QASHKAPSVT LGYLANYLAE LTLTNYNFLR
401: FLPSVVAASA VFLARWTLDQ SDLPWNCTLE HYTSYKSSDI QICVCALWEL QGNTSRCPLN AIREKYQHKK LYFSLQFECV ANMLSPELAQ SLFSRQANDT
501: NPLLINDS
101: LQSRPTQKVG QNPSKNKQRS KKVPKPPLPA VSATSFVNDC HNVEEAQKEE LSPPKEEPTA LLENKGSLLQ NTERNRESGF HEAFFQGRIT RDKFETANSN
201: TGDYAGLNII DIDKDNGNPQ MCVSYAAEIY TNLMAAELIR RPKSNYMETL QRDITKGMRG ILIDWLVEVS EEYKLVPDTL YLTVYLIDQF LSWKYIERQK
301: LQLLGITSML IASKYEEICA PRVEEFCFIT DNTYTKDQVL KMECQVLNGL GYNLSVPTTK TFLRRFLRAA QASHKAPSVT LGYLANYLAE LTLTNYNFLR
401: FLPSVVAASA VFLARWTLDQ SDLPWNCTLE HYTSYKSSDI QICVCALWEL QGNTSRCPLN AIREKYQHKK LYFSLQFECV ANMLSPELAQ SLFSRQANDT
501: NPLLINDS
001: MYCSSSMHPN ANKENISTSD VQESFVRITR SRAKKAMGRG VSIPPTKPSF KQQKRRAVLK DVSNTSADII YSELRKGGNI KANRKCLKEP KKAAKEGANS
101: AMDILVDMHT EKSKLAEDLS KIRMAEAQDV SLSNFKDEEI TEQQEDGSGV MELLQVVDID SNVEDPQCCS LYAADIYDNI HVAELQQRPL ANYMELVQRD
201: IDPDMRKILI DWLVEVSDDY KLVPDTLYLT VNLIDRFLSN SYIERQRLQL LGVSCMLIAS KYEELSAPGV EEFCFITANT YTRPEVLSME IQILNFVHFR
301: LSVPTTKTFL RRFIKAAQAS YKVPFIELEY LANYLAELTL VEYSFLRFLP SLIAASAVFL ARWTLDQTDH PWNPTLQHYT RYEVAELKNT VLAMEDLQLN
401: TSGCTLAATR EKYNQPKFKS VAKLTSPKRV TSLFSR
101: AMDILVDMHT EKSKLAEDLS KIRMAEAQDV SLSNFKDEEI TEQQEDGSGV MELLQVVDID SNVEDPQCCS LYAADIYDNI HVAELQQRPL ANYMELVQRD
201: IDPDMRKILI DWLVEVSDDY KLVPDTLYLT VNLIDRFLSN SYIERQRLQL LGVSCMLIAS KYEELSAPGV EEFCFITANT YTRPEVLSME IQILNFVHFR
301: LSVPTTKTFL RRFIKAAQAS YKVPFIELEY LANYLAELTL VEYSFLRFLP SLIAASAVFL ARWTLDQTDH PWNPTLQHYT RYEVAELKNT VLAMEDLQLN
401: TSGCTLAATR EKYNQPKFKS VAKLTSPKRV TSLFSR
Arabidopsis Description
CYCA2-2Cyclin-A2-2 [Source:UniProtKB/Swiss-Prot;Acc:Q147G5]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.