Factsheet for GSMUA_Achr3P25340_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr11P...	nucleus
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr11P...	nucleus
GSMUA_Achr1P00560_001
GSMUA_Achr1P00900_001	nucleus
GSMUA_Achr1P20410_001	nucleus
GSMUA_Achr2P06030_001
GSMUA_Achr2P11710_001
GSMUA_Achr2P11750_001
GSMUA_Achr2P11790_001	nucleus
GSMUA_Achr2P12040_001
GSMUA_Achr2P13820_001
GSMUA_Achr2P18250_001
GSMUA_Achr4P02420_001
GSMUA_Achr4P21690_001
GSMUA_Achr4P26490_001	nucleus
GSMUA_Achr4P30100_001
GSMUA_Achr5P12920_001	nucleus
GSMUA_Achr5P17100_001
GSMUA_Achr5P17110_001
GSMUA_Achr5P20430_001	nucleus
GSMUA_Achr5P21770_001	nucleus
GSMUA_Achr6P00410_001
GSMUA_Achr6P06920_001
GSMUA_Achr6P36640_001	nucleus
GSMUA_Achr8P12510_001	nucleus
GSMUA_Achr8P14860_001
GSMUA_Achr8P15790_001
GSMUA_Achr8P15800_001
GSMUA_Achr8P20510_001
GSMUA_Achr8P28400_001
GSMUA_Achr9P11470_001
GSMUA_Achr9P19970_001
GSMUA_Achr9P19980_001
GSMUA_Achr9P25030_001
GSMUA_Achr9P25620_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G15570.1	GSMUA_Achr2P13820_001	AT1G57720.1	20706207
AT1G15570.1	GSMUA_Achr8P15790_001	AT1G57720.1	20706207
AT1G15570.1	GSMUA_Achr8P15800_001	AT1G57720.1	20706207
AT1G15570.1	GSMUA_Achr9P11470_001	AT1G57720.1	20706207
AT1G15570.1	GSMUA_Achr9P19970_001	AT1G57720.1	20706207
AT1G15570.1	GSMUA_Achr9P19980_001	AT1G57720.1	20706207
AT1G15570.1	GSMUA_Achr9P25030_001	AT1G57720.1	20706207
AT1G15570.1	GSMUA_Achr11P...	AT1G61870.1	20706207
AT1G15570.1	GSMUA_Achr6P00410_001	AT1G61870.1	20706207
AT1G15570.1	GSMUA_Achr10P...	AT1G64180.1	21798944
AT1G15570.1	GSMUA_Achr10P...	AT1G64180.1	21798944
AT1G15570.1	GSMUA_Achr2P11710_001	AT2G27960.1	20706207
AT1G15570.1	GSMUA_Achr2P11750_001	AT2G27960.1	20706207
AT1G15570.1	GSMUA_Achr8P20510_001	AT3G11270.1	20706207
AT1G15570.1	GSMUA_Achr9P25620_001	AT3G11270.1	20706207
AT1G15570.1	GSMUA_Achr2P06030_001	AT3G24140.1	21798944
AT1G15570.1	GSMUA_Achr8P28400_001	AT3G24140.1	21798944
AT1G15570.1	GSMUA_Achr11P...	AT3G48150.1	21798944
AT1G15570.1	GSMUA_Achr11P...	AT3G48750.1	16415207
AT1G15570.1	GSMUA_Achr11P...	AT3G54180.1	20706207
AT1G15570.1	GSMUA_Achr4P02420_001	AT3G54180.1	20706207
AT1G15570.1	GSMUA_Achr1P00560_001	AT4G17680.1	21798944
AT1G15570.1	GSMUA_Achr2P12040_001	AT4G17680.1	21798944
AT1G15570.1	GSMUA_Achr2P18250_001	AT4G17680.1	21798944
AT1G15570.1	GSMUA_Achr4P21690_001	AT4G17680.1	21798944
AT1G15570.1	GSMUA_Achr4P30100_001	AT4G17680.1	21798944
AT1G15570.1	GSMUA_Achr8P14860_001	AT4G17680.1	21798944
AT1G15570.1	GSMUA_Achr10P...	AT4G25200.1	21798944
AT1G15570.1	GSMUA_Achr5P17100_001	AT5G16970.1	20706207
AT1G15570.1	GSMUA_Achr5P17110_001	AT5G16970.1	20706207
AT1G15570.1	GSMUA_Achr6P06920_001	AT5G16970.1	20706207
AT1G80370.1	GSMUA_Achr11P...	AT2G32710.1	20018602
AT1G80370.1	GSMUA_Achr11P...	AT2G32710.1	20018602
AT1G80370.1	GSMUA_Achr1P00900_001	AT2G32710.1	20018602
AT1G80370.1	GSMUA_Achr1P20410_001	AT2G32710.1	20018602
AT1G80370.1	GSMUA_Achr2P11790_001	AT2G32710.1	20018602
AT1G80370.1	GSMUA_Achr4P26490_001	AT2G32710.1	20018602
AT1G80370.1	GSMUA_Achr5P12920_001	AT2G32710.1	20018602
AT1G80370.1	GSMUA_Achr5P20430_001	AT2G32710.1	20018602
AT1G80370.1	GSMUA_Achr5P21770_001	AT2G32710.1	20018602
AT1G80370.1	GSMUA_Achr6P36640_001	AT2G32710.1	20018602
AT1G80370.1	GSMUA_Achr8P12510_001	AT2G32710.1	20018602

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P14000_001	Banana	nucleus, plasma membrane, plastid	37.64	82.59
Os12t0502300-01	Rice	nucleus, plastid	53.32	58.98
Bra000822.1-P	Field mustard	nucleus	40.41	58.09
CDY61993	Canola	nucleus	39.48	56.76
CDY48212	Canola	nucleus	39.11	56.23
Bra031463.1-P	Field mustard	nucleus	38.01	55.83
TraesCS5D01G121100.2	Wheat	plastid	50.92	54.33
TraesCSU01G054300.1	Wheat	nucleus	50.0	54.09
TraesCS3D01G529100.1	Wheat	plastid	50.37	54.06
TraesCS5B01G114300.2	Wheat	plastid	50.55	54.04
CDX81722	Canola	nucleus, plastid	40.04	53.85
TraesCS5A01G108500.2	Wheat	plastid	50.37	53.74
OQU77084	Sorghum	nucleus	48.34	53.69
TraesCS3A01G523600.1	Wheat	plastid	50.18	53.65
HORVU3Hr1G114440.21	Barley	nucleus, plastid	49.63	53.06
Bra026756.1-P	Field mustard	plastid	40.04	53.06
CDY53304	Canola	plastid	39.67	52.57
CDY66415	Canola	nucleus	41.51	51.84
KXG23504	Sorghum	mitochondrion, nucleus	45.94	51.55
CDX79389	Canola	plastid	41.14	51.5
CDY36574	Canola	mitochondrion, nucleus	41.14	51.15
VIT_09s0002g05240.t01	Wine grape	nucleus	46.13	51.02
CDX67944	Canola	plastid	40.59	50.93
Solyc03g120440.1.1	Tomato	nucleus, plastid	42.99	50.87
Bra003563.1-P	Field mustard	plastid	40.41	50.69
Zm00001d023732_P002	Maize	mitochondrion, nucleus, plastid	45.2	50.52
PGSC0003DMT400006576	Potato	nucleus	42.99	50.32
Zm00001d014756_P006	Maize	nucleus, plastid	48.34	50.29
KRH47513	Soybean	nucleus	44.1	50.21
CDX96836	Canola	nucleus, plastid	40.59	50.0
CDY37592	Canola	mitochondrion, plastid	42.07	49.89
Bra016654.1-P	Field mustard	nucleus, plastid	40.77	49.66
Bra008477.1-P	Field mustard	plastid	41.7	49.45
CDY38664	Canola	nucleus, plastid	41.51	49.45
AT1G15570.1	Thale cress	nucleus, plastid	40.59	48.89
CDY39984	Canola	plastid	40.22	48.66
KRH44391	Soybean	nucleus	42.25	48.62
AT1G80370.1	Thale cress	plastid	41.33	48.59
Bra026120.1-P	Field mustard	nucleus	41.51	48.28
GSMUA_Achr10P...	Banana	nucleus	27.86	47.63
GSMUA_Achr2P21530_001	Banana	cytosol, nucleus, plastid	25.09	47.55
Bra035186.1-P	Field mustard	plastid	40.41	47.4
CDX87305	Canola	plastid	40.41	47.4
GSMUA_Achr2P21520_001	Banana	nucleus	28.41	42.78
GSMUA_Achr6P11130_001	Banana	nucleus	30.63	42.46
GSMUA_AchrUn_...	Banana	nucleus	19.37	35.23
GSMUA_Achr5P19270_001	Banana	cytosol	14.02	35.02
GSMUA_Achr2P19220_001	Banana	nucleus, plastid	32.29	34.86
GSMUA_Achr5P06960_001	Banana	nucleus, plastid	32.1	34.8
GSMUA_Achr3P24980_001	Banana	nucleus	21.22	28.61
GSMUA_Achr4P10090_001	Banana	nucleus	22.14	28.24
GSMUA_Achr10P...	Banana	nucleus	22.51	26.93
GSMUA_Achr8P13320_001	Banana	nucleus	20.3	26.19
GSMUA_Achr7P21380_001	Banana	nucleus	21.96	26.04
GSMUA_Achr11P...	Banana	nucleus	19.56	25.98
GSMUA_Achr8P23970_001	Banana	nucleus	20.85	25.98
GSMUA_Achr5P19110_001	Banana	nucleus	20.3	25.94
GSMUA_Achr11P...	Banana	endoplasmic reticulum, vacuole	20.66	16.77

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.1	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_C-dom	InterPro:Cyclin_N
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	EnsemblPlantsGene:GSMUA_Achr3G25340_001	EnsemblPlants:GSMUA_Achr3P25340_001
EnsemblPlants:GSMUA_Achr3T25340_001	UniProt:M0SHQ0	PFAM:PF00134	PFAM:PF02984	PIRSF:PIRSF001771	PANTHER:PTHR10177
PANTHER:PTHR10177:SF239	SMART:SM00385	SMART:SM01332	SUPFAM:SSF47954	UniParc:UPI000294B1D1	SEG:seg

Description

Cyclin-A2-1 [Source:GMGC_GENE;Acc:GSMUA_Achr3G25340_001]

Coordinates

chr3:-:25561091..25566045

Molecular Weight (calculated)

60760.9 Da

IEP (calculated)

8.747

GRAVY (calculated)

-0.225

Length

542 amino acids

Sequence
(BLAST)

001: MKKEGSLGTS FEAPCGRITR ARAAACRANG KLPPLMPSVA NAEKKQTRCS NLKRAAFDEN SHGSHPAASQ CKKKRAVLTD VTNMFSQNST RNWVPAGKVK
101: VQCCLSLATE SSFNSFSHLF HIGHASLLKK EKRNILQQKE KYFFVFFYLF ASSSTTAQRA KSGPSKTRRY SNSKTSKLSL VGNASTLANV EDKMNEGVQK
201: VETLVSKGSP PFGNMEDSLV ALQHKELAIV GNTPTYADMK NEIIEGAQNA VTLVSKESYP GLDFIDIDTD HGNPQMCCTY ASEFYTNLRA AELIRRPVSN
301: FMEALQRDIT ESMRGILIDW LVEVSEEYRL VPDTLYLTVY IIDQFLSQNY IERQRLQLLG ITCMLIASKY EEMCAPRVEE FCFITDNTYS KAEVLNMESQ
401: VLGFLGFQLS VPTAKTFLRR FLRAAHASNK VPSLALGYLA NYLAELTLVE YSFIKFLPSV VAASAVFLAR WTLDQSDHPW NPTLEYYTSY TAMDLKATVF
501: ALQELQKNSK SCPLNAIREK YRQQKFECVA TLASPSLVES LF

Best Arabidopsis Sequence Match ( AT1G15570.1 )
(BLAST)

001: MGKENAVSRP FTRSLASALR ASEVTSTTQN QQRVNTKRPA LEDTRATGPN KRKKRAVLGE ITNVNSNTAI LEAKNSKQIK KGRGHGLAST SQLATSVTSE
101: VTDLQSRTDA KVEVASNTAG NLSVSKGTDN TADNCIEIWN SRLPPRPLGR SASTAEKSAV IGSSTVPDIP KFVDIDSDDK DPLLCCLYAP EIHYNLRVSE
201: LKRRPLPDFM ERIQKDVTQS MRGILVDWLV EVSEEYTLAS DTLYLTVYLI DWFLHGNYVQ RQQLQLLGIT CMLIASKYEE ISAPRIEEFC FITDNTYTRD
301: QVLEMENQVL KHFSFQIYTP TPKTFLRRFL RAAQASRLSP SLEVEFLASY LTELTLIDYH FLKFLPSVVA ASAVFLAKWT MDQSNHPWNP TLEHYTTYKA
401: SDLKASVHAL QDLQLNTKGC PLSAIRMKYR QEKYKSVAVL TSPKLLDTLF

Arabidopsis Description

CYCA2-3CYCA2 [Source:UniProtKB/TrEMBL;Acc:A0A178WNJ4]
SUBAcon: [nucleus,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.