CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
mitochondrion 2
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EER89430
EER89431
EER89969
EER91497	nucleus
EER95545	nucleus
EES01589
EES04403
EES04758
EES05709
EES07517
EES08221
EES11600
EES15619
EES16901
KXG19616
KXG22636
KXG23283
KXG28081
KXG29970
KXG38894
KXG40187
KXG40336
OQU75612
OQU75930
OQU76071
OQU76466
OQU83135
OQU85385

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G15570.1	EER89969	AT1G57720.1	20706207
AT1G15570.1	EES04758	AT1G57720.1	20706207
AT1G15570.1	EES01589	AT1G61870.1	20706207
AT1G15570.1	KXG29970	AT1G64180.1	21798944
AT1G15570.1	OQU76466	AT1G64180.1	21798944
AT1G15570.1	KXG40187	AT2G27960.1	20706207
AT1G15570.1	EES11600	AT3G11270.1	20706207
AT1G15570.1	KXG22636	AT3G24140.1	21798944
AT1G15570.1	EES07517	AT3G48150.1	21798944
AT1G15570.1	EES04403	AT3G48750.1	16415207
AT1G15570.1	KXG40336	AT3G48750.1	16415207
AT1G15570.1	EES15619	AT3G54180.1	20706207
AT1G15570.1	EES05709	AT4G17680.1	21798944
AT1G15570.1	KXG38894	AT4G17680.1	21798944
AT1G15570.1	EER89430	AT4G25200.1	21798944
AT1G15570.1	EER89431	AT4G25200.1	21798944
AT1G15570.1	KXG19616	AT4G25200.1	21798944
AT1G15570.1	OQU75612	AT4G25200.1	21798944
AT1G15570.1	OQU75930	AT4G25200.1	21798944
AT1G15570.1	OQU76071	AT4G25200.1	21798944
AT1G15570.1	OQU85385	AT4G25200.1	21798944
AT1G15570.1	EES08221	AT5G16970.1	20706207
AT1G15570.1	EES16901	AT5G16970.1	20706207
AT1G15570.1	KXG23283	AT5G16970.1	20706207
AT1G15570.1	KXG28081	AT5G16970.1	20706207
AT1G15570.1	OQU83135	AT5G16970.1	20706207
AT1G80370.1	EER91497	AT2G32710.1	20018602
AT1G80370.1	EER95545	AT2G32710.1	20018602

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d014756_P006	Maize	nucleus, plastid	88.73	83.11
Os12t0502300-01	Rice	nucleus, plastid	75.82	75.51
GSMUA_Achr1P14000_001	Banana	nucleus, plasma membrane, plastid	34.84	68.83
TraesCS3D01G529100.1	Wheat	plastid	70.7	68.32
TraesCSU01G054300.1	Wheat	nucleus	70.08	68.26
TraesCS3A01G523600.1	Wheat	plastid	70.49	67.85
HORVU3Hr1G114440.21	Barley	nucleus, plastid	70.29	67.65
TraesCS5D01G121100.2	Wheat	plastid	69.67	66.93
TraesCS5B01G114300.2	Wheat	plastid	69.26	66.67
TraesCS5A01G108500.2	Wheat	plastid	68.65	65.94
KXG23504	Sorghum	mitochondrion, nucleus	62.7	63.35
OQU91386	Sorghum	nucleus	29.92	55.94
Bra000822.1-P	Field mustard	nucleus	42.83	55.44
Bra031463.1-P	Field mustard	nucleus	41.19	54.47
CDY61993	Canola	nucleus	42.01	54.38
CDY48212	Canola	nucleus	41.6	53.85
CDY53304	Canola	plastid	42.62	50.86
CDX79389	Canola	plastid	45.08	50.81
CDX67944	Canola	plastid	44.88	50.69
Bra026756.1-P	Field mustard	plastid	42.42	50.61
CDX81722	Canola	nucleus, plastid	41.6	50.37
Bra003563.1-P	Field mustard	plastid	44.26	50.0
CDY66415	Canola	nucleus	44.06	49.54
VIT_09s0002g05240.t01	Wine grape	nucleus	49.59	49.39
KRH47513	Soybean	nucleus	47.95	49.16
CDY36574	Canola	mitochondrion, nucleus	43.24	48.39
GSMUA_Achr3P25340_001	Banana	nucleus	53.69	48.34
CDY37592	Canola	mitochondrion, plastid	45.08	48.14
Bra008477.1-P	Field mustard	plastid	45.08	48.14
Solyc03g120440.1.1	Tomato	nucleus, plastid	44.88	47.82
KRH44391	Soybean	nucleus	46.11	47.77
CDY38664	Canola	nucleus, plastid	44.47	47.69
PGSC0003DMT400006576	Potato	nucleus	45.08	47.52
CDX96836	Canola	nucleus, plastid	42.83	47.5
AT1G80370.1	Thale cress	plastid	44.47	47.07
CDY39984	Canola	plastid	43.03	46.88
Bra016654.1-P	Field mustard	nucleus, plastid	42.62	46.74
AT1G15570.1	Thale cress	nucleus, plastid	43.03	46.67
Bra026120.1-P	Field mustard	nucleus	43.65	45.71
CDX87305	Canola	plastid	43.24	45.67
Bra035186.1-P	Field mustard	plastid	42.83	45.24
EES16237	Sorghum	nucleus, plastid	33.2	37.85
KXG24389	Sorghum	nucleus	19.06	36.9
EER95303	Sorghum	nucleus, plastid	27.25	34.91
KXG21616	Sorghum	nucleus, plastid	32.99	33.61
KXG20945	Sorghum	nucleus	25.2	29.01
EES12664	Sorghum	nucleus	25.0	28.24
EES03772	Sorghum	nucleus, plastid	25.0	27.17
EES18429	Sorghum	mitochondrion	24.59	26.09
EES02793	Sorghum	nucleus	23.77	25.05

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.1	UniProt:A0A194YML6	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_C-dom
InterPro:Cyclin_N	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	ProteinID:KXG20841.1
ProteinID:KXG20842.1	ProteinID:OQU77082.1	ProteinID:OQU77083.1	EnsemblPlants:OQU77084	ProteinID:OQU77084	ProteinID:OQU77084.1
PFAM:PF00134	PFAM:PF02984	PIRSF:PIRSF001771	ScanProsite:PS00292	PANTHER:PTHR10177	PANTHER:PTHR10177:SF239
SMART:SM00385	SMART:SM01332	EnsemblPlantsGene:SORBI_3010G260800	SUPFAM:SSF47954	UniParc:UPI0007F2BA58	:

Description

hypothetical protein

Coordinates

chr10:-:59730292..59735479

Molecular Weight (calculated)

55077.0 Da

IEP (calculated)

8.986

GRAVY (calculated)

-0.430

Length

488 amino acids

Sequence
(BLAST)

001: MAARKENPEL IACQAPNGRI TRAQAAANRR SFGVLPSVPL PAKTDRKQTT QGKMKRGSSY DNTSASTAIS GPQPKRRTVL RDVTNLRNAN SNKTFAAAPK
101: VQTRPSLRTG RTVTRGKQCT KRIPKIPQPA GNGGSFANDS SIAEETQEKL LAQKEEPILL LENRGSLSLQ NVERNRDSAC HEAFFKERNV RDICEPSVSK
201: NGDSSVLDIV DIDKDNGNPQ MCASYVVEIY SNLMVSELMR RPSPNYMEGL QRDITKGMRG ILIDWLVEVS EEYKLVPDTL YLTVYVIDRF LSRNYIERQR
301: LQLLGITSML VASKYEEICA PRVEEFCFIT DNTYTKAEVL KMECQVLNDL GFHLSVPTTK TFLRRFLRAA QASRKIPSMT LGFLANYLAE LTLTDYEFLK
401: FLPSLVAASA VFLARWTLDQ SDEPWNQTLE HYTSYKCSDI QLCVCALREL QHNTSNCPLN AIREKYKHQK FDCVANLTSP ELPRSLFS

Best Arabidopsis Sequence Match ( AT5G11300.1 )
(BLAST)

001: MYCSSSMHPN ANKENISTSD VQESFVRITR SRAKKAMGRG VSIPPTKPSF KQQKRRAVLK DVSNTSADII YSELRKGGNI KANRKCLKEP KKAAKEGANS
101: AMDILVDMHT EKSKLAEDLS KIRMAEAQDV SLSNFKDEEI TEQQEDGSGV MELLQVVDID SNVEDPQCCS LYAADIYDNI HVAELQQRPL ANYMELVQRD
201: IDPDMRKILI DWLVEVSDDY KLVPDTLYLT VNLIDRFLSN SYIERQRLQL LGVSCMLIAS KYEELSAPGV EEFCFITANT YTRPEVLSME IQILNFVHFR
301: LSVPTTKTFL RRFIKAAQAS YKVPFIELEY LANYLAELTL VEYSFLRFLP SLIAASAVFL ARWTLDQTDH PWNPTLQHYT RYEVAELKNT VLAMEDLQLN
401: TSGCTLAATR EKYNQPKFKS VAKLTSPKRV TSLFSR

Arabidopsis Description

CYCA2-2Cyclin-A2-2 [Source:UniProtKB/Swiss-Prot;Acc:Q147G5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.