CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

plastid 2
mitochondrion 4
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER89430
EER89431
EER89969
EER91497	nucleus
EER95545	nucleus
EES01589
EES04403
EES04758
EES05709
EES07517
EES08221
EES11600
EES15619
EES16901
KXG19616
KXG22636
KXG23283
KXG28081
KXG29970
KXG38894
KXG40187
KXG40336
OQU75612
OQU75930
OQU76071
OQU76466
OQU83135
OQU85385

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G15570.1	EER89969	AT1G57720.1	20706207
AT1G15570.1	EES04758	AT1G57720.1	20706207
AT1G15570.1	EES01589	AT1G61870.1	20706207
AT1G15570.1	KXG29970	AT1G64180.1	21798944
AT1G15570.1	OQU76466	AT1G64180.1	21798944
AT1G15570.1	KXG40187	AT2G27960.1	20706207
AT1G15570.1	EES11600	AT3G11270.1	20706207
AT1G15570.1	KXG22636	AT3G24140.1	21798944
AT1G15570.1	EES07517	AT3G48150.1	21798944
AT1G15570.1	EES04403	AT3G48750.1	16415207
AT1G15570.1	KXG40336	AT3G48750.1	16415207
AT1G15570.1	EES15619	AT3G54180.1	20706207
AT1G15570.1	EES05709	AT4G17680.1	21798944
AT1G15570.1	KXG38894	AT4G17680.1	21798944
AT1G15570.1	EER89430	AT4G25200.1	21798944
AT1G15570.1	EER89431	AT4G25200.1	21798944
AT1G15570.1	KXG19616	AT4G25200.1	21798944
AT1G15570.1	OQU75612	AT4G25200.1	21798944
AT1G15570.1	OQU75930	AT4G25200.1	21798944
AT1G15570.1	OQU76071	AT4G25200.1	21798944
AT1G15570.1	OQU85385	AT4G25200.1	21798944
AT1G15570.1	EES08221	AT5G16970.1	20706207
AT1G15570.1	EES16901	AT5G16970.1	20706207
AT1G15570.1	KXG23283	AT5G16970.1	20706207
AT1G15570.1	KXG28081	AT5G16970.1	20706207
AT1G15570.1	OQU83135	AT5G16970.1	20706207
AT1G80370.1	EER91497	AT2G32710.1	20018602
AT1G80370.1	EER95545	AT2G32710.1	20018602

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d023732_P002	Maize	mitochondrion, nucleus, plastid	87.78	87.42
GSMUA_Achr1P14000_001	Banana	nucleus, plasma membrane, plastid	32.71	63.97
OQU77084	Sorghum	nucleus	63.35	62.7
CDY61993	Canola	nucleus	40.37	51.72
Bra000822.1-P	Field mustard	nucleus	40.37	51.72
CDY48212	Canola	nucleus	40.17	51.46
Bra031463.1-P	Field mustard	nucleus	39.13	51.22
VIT_09s0002g05240.t01	Wine grape	nucleus	49.28	48.57
OQU91386	Sorghum	nucleus	26.09	48.28
CDY53304	Canola	plastid	40.58	47.92
CDX81722	Canola	nucleus, plastid	39.96	47.89
Bra026756.1-P	Field mustard	plastid	40.17	47.43
CDY36574	Canola	mitochondrion, nucleus	42.65	47.25
CDY66415	Canola	nucleus	42.24	47.0
PGSC0003DMT400006576	Potato	nucleus	44.72	46.65
Solyc03g120440.1.1	Tomato	nucleus, plastid	44.1	46.51
CDX79389	Canola	plastid	41.41	46.19
AT1G15570.1	Thale cress	nucleus, plastid	42.86	46.0
GSMUA_Achr3P25340_001	Banana	nucleus	51.55	45.94
Bra003563.1-P	Field mustard	plastid	40.99	45.83
CDX67944	Canola	plastid	40.99	45.83
CDX96836	Canola	nucleus, plastid	40.79	44.77
KRH47513	Soybean	nucleus	43.69	44.33
Bra016654.1-P	Field mustard	nucleus, plastid	40.79	44.27
Bra026120.1-P	Field mustard	nucleus	42.65	44.21
AT1G80370.1	Thale cress	plastid	41.61	43.6
CDY37592	Canola	mitochondrion, plastid	41.2	43.54
Bra008477.1-P	Field mustard	plastid	41.2	43.54
KRH44391	Soybean	nucleus	42.44	43.52
CDY39984	Canola	plastid	40.17	43.3
CDY38664	Canola	nucleus, plastid	40.58	43.08
CDX87305	Canola	plastid	40.37	42.21
Bra035186.1-P	Field mustard	plastid	40.37	42.21
EES16237	Sorghum	nucleus, plastid	32.3	36.45
KXG24389	Sorghum	nucleus	17.81	34.13
EER95303	Sorghum	nucleus, plastid	25.67	32.55
KXG21616	Sorghum	nucleus, plastid	31.26	31.52
KXG20945	Sorghum	nucleus	23.6	26.89
EES03772	Sorghum	nucleus, plastid	24.02	25.84
EES12664	Sorghum	nucleus	22.36	25.0
EES18429	Sorghum	mitochondrion	22.77	23.91
EES02793	Sorghum	nucleus	21.53	22.46

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.1	UniProt:A0A1B6PCU6	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_C-dom
InterPro:Cyclin_N	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	EnsemblPlants:KXG23504
ProteinID:KXG23504	ProteinID:KXG23504.1	PFAM:PF00134	PFAM:PF02984	PIRSF:PIRSF001771	PANTHER:PTHR10177
PANTHER:PTHR10177:SF239	SMART:SM00385	SMART:SM01332	EnsemblPlantsGene:SORBI_3008G104000	SUPFAM:SSF47954	UniParc:UPI00081AB6EE

Description

hypothetical protein

Coordinates

chr8:-:49071525..49074903

Molecular Weight (calculated)

53406.1 Da

IEP (calculated)

9.144

GRAVY (calculated)

-0.268

Length

483 amino acids

Sequence
(BLAST)

001: MAARKERPLF TAGQATSVRI TRSQAAANRT RSGLAPYVPL PLKTEYKHAV KGKMKREASG ENADAGASAP QPKRRTVLKN VTNISCAKTS KRCNTVTGLK
101: LGPSQKVGQS INKQCTNKIP KLLPLAVGGS SLVNDSSSAE ETQKVDLLAQ KEKQIVLLKG AQPLHNTEQN KAGACNETFV EGRNARNVLE TAALKAGVSN
201: GLNIVDIDKN NGDPQMCVTY VAEIYRNLMA SELIRRPRSN YMETLQQDIT ASMRGVLIDW LVEVSEEYKL VADTLYLAVH LIDQFLSQNC IQTRKLQLLG
301: ITSMLIASKY EEYSAPSAEE FCNITDSTYA KAEVLELEQH VLNDVGFHLS VPTTNTFLRR FLRAAQASCI APLVPLTYLA NYLAELTLIS YGFLKFLPSV
401: VAASSVFLAK WTLDQSDHPW NPTLEHYTSY KSSNLRSCVR ALQELQHNTS NCPLNAIREK YGQQKFECVA NLRSPELLQS LFS

Best Arabidopsis Sequence Match ( AT1G15570.1 )
(BLAST)

001: MGKENAVSRP FTRSLASALR ASEVTSTTQN QQRVNTKRPA LEDTRATGPN KRKKRAVLGE ITNVNSNTAI LEAKNSKQIK KGRGHGLAST SQLATSVTSE
101: VTDLQSRTDA KVEVASNTAG NLSVSKGTDN TADNCIEIWN SRLPPRPLGR SASTAEKSAV IGSSTVPDIP KFVDIDSDDK DPLLCCLYAP EIHYNLRVSE
201: LKRRPLPDFM ERIQKDVTQS MRGILVDWLV EVSEEYTLAS DTLYLTVYLI DWFLHGNYVQ RQQLQLLGIT CMLIASKYEE ISAPRIEEFC FITDNTYTRD
301: QVLEMENQVL KHFSFQIYTP TPKTFLRRFL RAAQASRLSP SLEVEFLASY LTELTLIDYH FLKFLPSVVA ASAVFLAKWT MDQSNHPWNP TLEHYTTYKA
401: SDLKASVHAL QDLQLNTKGC PLSAIRMKYR QEKYKSVAVL TSPKLLDTLF

Arabidopsis Description

CYCA2-3CYCA2 [Source:UniProtKB/TrEMBL;Acc:A0A178WNJ4]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.