Factsheet for Bra016654.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 3
nucleus 4
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001929.1-P
Bra006369.1-P
Bra006381.1-P
Bra008581.1-P
Bra012650.1-P
Bra013872.1-P
Bra014835.1-P
Bra017408.1-P
Bra018036.1-P
Bra018081.1-P
Bra027683.1-P
Bra028351.1-P
Bra028357.1-P
Bra028380.1-P
Bra029917.1-P
Bra032422.1-P
Bra033769.1-P
Bra039199.1-P	nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G15570.1	Bra028380.1-P	AT1G61870.1	20706207
AT1G15570.1	Bra027683.1-P	AT1G64180.1	21798944
AT1G15570.1	Bra039199.1-P	AT2G23430.1	20018602
AT1G15570.1	Bra006369.1-P	AT3G11270.1	20706207
AT1G15570.1	Bra017408.1-P	AT3G11270.1	20706207
AT1G15570.1	Bra032422.1-P	AT3G11270.1	20706207
AT1G15570.1	Bra001929.1-P	AT3G24140.1	21798944
AT1G15570.1	Bra028351.1-P	AT3G24140.1	21798944
AT1G15570.1	Bra028357.1-P	AT3G24140.1	21798944
AT1G15570.1	Bra018081.1-P	AT3G48150.1	21798944
AT1G15570.1	Bra033769.1-P	AT3G48150.1	21798944
AT1G15570.1	Bra018036.1-P	AT3G48750.1	16415207
AT1G15570.1	Bra029917.1-P	AT3G48750.1	16415207
AT1G15570.1	Bra014835.1-P	AT3G54180.1	20706207
AT1G15570.1	Bra012650.1-P	AT4G17680.1	21798944
AT1G15570.1	Bra013872.1-P	AT4G25200.1	21798944
AT1G15570.1	Bra006381.1-P	AT5G16970.1	20706207
AT1G15570.1	Bra008581.1-P	AT5G16970.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX96836	Canola	nucleus, plastid	97.53	98.64
Bra026756.1-P	Field mustard	plastid	75.73	82.4
Bra026120.1-P	Field mustard	nucleus	82.25	78.54
AT1G15570.1	Thale cress	nucleus, plastid	78.65	77.78
Bra000822.1-P	Field mustard	nucleus	58.88	69.5
Bra031463.1-P	Field mustard	nucleus	57.3	69.11
Bra003563.1-P	Field mustard	plastid	65.84	67.82
Bra008477.1-P	Field mustard	plastid	67.19	65.43
Bra035186.1-P	Field mustard	plastid	65.84	63.42
GSMUA_Achr1P14000_001	Banana	nucleus, plasma membrane, plastid	33.93	61.13
VIT_09s0002g05240.t01	Wine grape	nucleus	56.4	51.22
KRH47513	Soybean	nucleus	54.61	51.05
KRH44391	Soybean	nucleus	51.46	48.62
Solyc03g120440.1.1	Tomato	nucleus, plastid	48.54	47.16
PGSC0003DMT400006576	Potato	nucleus	48.76	46.87
Bra008973.1-P	Field mustard	nucleus, plastid	45.62	46.45
Bra033658.1-P	Field mustard	nucleus	35.73	44.66
Bra040792.1-P	Field mustard	nucleus, plastid	35.06	42.86
Os12t0502300-01	Rice	nucleus, plastid	47.19	42.86
OQU77084	Sorghum	nucleus	46.74	42.62
Bra040710.1-P	Field mustard	nucleus	35.51	42.59
Bra032220.1-P	Field mustard	nucleus	33.93	42.3
Bra040793.1-P	Field mustard	nucleus	33.71	41.32
TraesCSU01G054300.1	Wheat	nucleus	46.29	41.12
TraesCS3A01G523600.1	Wheat	plastid	46.52	40.83
TraesCS3D01G529100.1	Wheat	plastid	46.29	40.79
KXG23504	Sorghum	mitochondrion, nucleus	44.27	40.79
GSMUA_Achr3P25340_001	Banana	nucleus	49.66	40.77
Bra040753.1-P	Field mustard	nucleus, plastid	33.26	40.77
TraesCS5D01G121100.2	Wheat	plastid	46.07	40.35
HORVU3Hr1G114440.21	Barley	nucleus, plastid	45.84	40.24
TraesCS5A01G108500.2	Wheat	plastid	45.84	40.16
Bra015671.1-P	Field mustard	plastid	34.83	40.16
TraesCS5B01G114300.2	Wheat	plastid	45.62	40.04
Zm00001d023732_P002	Maize	mitochondrion, nucleus, plastid	43.6	40.0
Zm00001d014756_P006	Maize	nucleus, plastid	46.07	39.35
Bra023606.1-P	Field mustard	plastid	36.85	39.14
Bra032202.1-P	Field mustard	plastid	36.85	38.86
Bra022173.1-P	Field mustard	nucleus, plastid	31.01	36.6
Bra017726.1-P	Field mustard	nucleus	27.87	30.54
Bra025831.1-P	Field mustard	nucleus	26.97	29.27
Bra024504.1-P	Field mustard	nucleus	27.42	29.12
Bra016460.1-P	Field mustard	nucleus	26.74	29.02
Bra037265.1-P	Field mustard	nucleus	26.29	28.61
Bra003727.1-P	Field mustard	nucleus	24.27	28.2
Bra002046.1-P	Field mustard	nucleus	24.72	27.99
Bra015762.1-P	Field mustard	nucleus	26.97	27.84
Bra005880.1-P	Field mustard	nucleus, plastid	24.72	26.57
Bra028741.1-P	Field mustard	nucleus	24.72	26.51
Bra011769.1-P	Field mustard	nucleus	24.04	25.0
Bra026065.1-P	Field mustard	nucleus	23.82	20.95
Bra036544.1-P	Field mustard	nucleus	44.72	20.16
Bra016640.1-P	Field mustard	nucleus	25.17	17.1

Protein Annotations

EnsemblPlants:Bra016654.1	EnsemblPlants:Bra016654.1-P	EnsemblPlantsGene:Bra016654	Gene3D:1.10.472.10	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_C-dom	InterPro:Cyclin_N
PANTHER:PTHR10177	PANTHER:PTHR10177:SF346	PFAM:PF00134	PFAM:PF02984	PIRSF:PIRSF001771	SMART:SM00385
SMART:SM01332	SUPFAM:SSF47954	UniParc:UPI0002545A6E	UniProt:M4DJH6	MapMan:13.1.1.1.1	:

Description

AT1G15570 (E=3e-197) CYCA2;3 | CYCA2;3 (CYCLIN A2;3); cyclin-dependent protein kinase regulator

Coordinates

chrA08:-:19448575..19450556

Molecular Weight (calculated)

50283.2 Da

IEP (calculated)

8.284

GRAVY (calculated)

-0.262

Length

445 amino acids

Sequence
(BLAST)

001: MWNENYVSRP FTRALASALR ASTTQNQQRA NTKRPASEDK NVTAPNKKNK GAVLADISNA SFNAPKLEVV TYSAKNIKQV KKGRGTSQLA SSCVTSENTK
101: LQSKTDEKAE AVSVTAGSMS FCKDTHDTAD NCNFRLPPRP LGRSASIVEK SDVIGSSTAL DIPKFIDIDS DDKDPLLCCL YAPQIYYSLR VSELKRRPVP
201: NFMERIQKDV TESMRGILVD WLVEVAEEYT LVPDTLYLTV YLIDWFLNGN YLERHKLQLL GVTCMLIASK YEEIYAPRIE EFCSITDNTY TRDQVLEMEN
301: QVLAHFSFQI YTPTPKTFLR RFLRAAHASC QSLSLGVELE FLASYLMELT LVDYHFLKFL PSVIAASAVF LAKWTLDQSN YPWNPTLEHY TTYKASDLKA
401: SVHALQDLQL NTKGCPLSAV RMKYKQEKFK SVAVLTSPKL LDTLF

Best Arabidopsis Sequence Match ( AT1G15570.1 )
(BLAST)

001: MGKENAVSRP FTRSLASALR ASEVTSTTQN QQRVNTKRPA LEDTRATGPN KRKKRAVLGE ITNVNSNTAI LEAKNSKQIK KGRGHGLAST SQLATSVTSE
101: VTDLQSRTDA KVEVASNTAG NLSVSKGTDN TADNCIEIWN SRLPPRPLGR SASTAEKSAV IGSSTVPDIP KFVDIDSDDK DPLLCCLYAP EIHYNLRVSE
201: LKRRPLPDFM ERIQKDVTQS MRGILVDWLV EVSEEYTLAS DTLYLTVYLI DWFLHGNYVQ RQQLQLLGIT CMLIASKYEE ISAPRIEEFC FITDNTYTRD
301: QVLEMENQVL KHFSFQIYTP TPKTFLRRFL RAAQASRLSP SLEVEFLASY LTELTLIDYH FLKFLPSVVA ASAVFLAKWT MDQSNHPWNP TLEHYTTYKA
401: SDLKASVHAL QDLQLNTKGC PLSAIRMKYR QEKYKSVAVL TSPKLLDTLF

Arabidopsis Description

CYCA2-3CYCA2 [Source:UniProtKB/TrEMBL;Acc:A0A178WNJ4]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.