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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 5
  • peroxisome 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, nucleus, peroxisome
BaCelLo:nucleus
EpiLoc:nucleus
MultiLoc:nucleus
Plant-mPloc:nucleus
PProwler:peroxisome
WoLF PSORT:cytosol
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra005185.1-P
Bra007023.1-P
Bra007262.1-P
Bra007982.1-P
Bra007983.1-P
Bra008912.1-P
Bra010722.1-P
Bra011899.1-P
Bra013838.1-P
Bra013997.1-P
Bra014000.1-P
Bra016143.1-P
Bra018682.1-P
Bra023365.1-P
Bra028187.1-P
Bra028409.1-P
Bra033563.1-P
Bra033582.1-P
Bra037056.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G35620.1 Bra005185.1-P AT1G07660.1 20706207
AT4G35620.1 Bra007023.1-P AT1G07820.1 20706207
AT4G35620.1 Bra007982.1-P AT1G71380.1 20706207
AT4G35620.1 Bra007983.1-P AT1G71380.1 20706207
AT4G35620.1 Bra016143.1-P AT1G71380.1 20706207
AT4G35620.1 Bra011899.1-P AT3G45970.1 20706207
AT4G35620.1 Bra033563.1-P AT3G45970.1 20706207
AT4G35620.1 Bra018682.1-P AT3G53730.1 20706207
AT4G35620.1 Bra007262.1-P AT3G56690.1 20706207
AT4G35620.1 Bra013997.1-P AT4G13850.1 20706207
AT4G35620.1 Bra014000.1-P AT4G13850.1 20706207
AT4G35620.1 Bra037056.1-P AT4G13850.1 20706207
AT4G35620.1 Bra013838.1-P AT4G24820.1 20706207
AT4G35620.1 Bra010722.1-P AT4G38900.1 20706207
AT4G35620.1 Bra033582.1-P AT4G38900.1 20706207
AT4G35620.1 Bra008912.1-P AT5G12140.1 20706207
AT4G35620.1 Bra023365.1-P AT5G12140.1 20706207
AT4G35620.1 Bra028187.1-P AT5G38480.1 20706207
AT4G35620.1 Bra028409.1-P AT5G38480.1 20706207
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY67210 Canola nucleus 99.01 99.01
AT4G35620.1 Thale cress nucleus 85.22 80.65
Bra037265.1-P Field mustard nucleus 73.65 73.11
Bra024504.1-P Field mustard nucleus 72.17 69.93
KRH76553 Soybean nucleus 62.81 59.03
KRH28901 Soybean nucleus 62.32 58.43
GSMUA_Achr5P19270_001 Banana cytosol 30.54 57.14
PGSC0003DMT400093973 Potato nucleus 44.58 54.85
Solyc02g061650.1.1 Tomato nucleus 47.29 54.7
Bra003727.1-P Field mustard nucleus 51.48 54.57
Bra016460.1-P Field mustard nucleus 52.71 52.2
Bra015762.1-P Field mustard nucleus 54.93 51.74
Bra025831.1-P Field mustard nucleus 51.72 51.22
GSMUA_Achr11P... Banana nucleus 50.99 50.74
GSMUA_Achr8P13320_001 Banana nucleus 51.23 49.52
TraesCS2B01G422800.1 Wheat nucleus 49.26 48.9
GSMUA_Achr5P19110_001 Banana nucleus 50.99 48.82
Os06t0726800-01 Rice nucleus 50.25 48.69
KXG20945 Sorghum nucleus 50.74 48.58
TraesCS2A01G404800.1 Wheat nucleus 48.28 48.4
HORVU0Hr1G022770.1 Barley nucleus, plastid 33.0 48.2
EES12664 Sorghum nucleus 51.23 48.15
Zm00001d026129_P001 Maize nucleus 50.49 48.12
Zm00001d036360_P002 Maize nucleus 50.25 48.11
Os04t0563700-01 Rice mitochondrion 49.75 48.1
HORVU7Hr1G121820.6 Barley nucleus 49.51 47.86
TraesCS2D01G401700.1 Wheat nucleus, plastid 49.26 47.51
TraesCS7D01G536000.1 Wheat nucleus 48.52 47.02
TraesCS7A01G549500.1 Wheat nucleus 48.28 46.78
TraesCS7B01G472800.1 Wheat nucleus 48.28 46.78
Zm00001d002662_P010 Maize nucleus 50.49 45.05
HORVU2Hr1G096070.2 Barley nucleus 47.78 41.19
Bra002046.1-P Field mustard nucleus 35.22 36.39
Bra028741.1-P Field mustard nucleus 36.21 35.42
Bra005880.1-P Field mustard nucleus, plastid 35.22 34.54
Bra040793.1-P Field mustard nucleus 28.82 32.23
Bra032220.1-P Field mustard nucleus 28.33 32.21
Bra015671.1-P Field mustard plastid 30.54 32.12
GSMUA_Achr11P... Banana endoplasmic reticulum, vacuole 52.71 32.04
Bra033658.1-P Field mustard nucleus 28.08 32.02
Bra011769.1-P Field mustard nucleus 33.5 31.78
Bra040753.1-P Field mustard nucleus, plastid 28.33 31.68
Bra040710.1-P Field mustard nucleus 28.57 31.27
Bra031463.1-P Field mustard nucleus 27.83 30.62
Bra000822.1-P Field mustard nucleus 28.33 30.5
Bra040792.1-P Field mustard nucleus, plastid 27.34 30.49
Bra022173.1-P Field mustard nucleus, plastid 26.85 28.91
Bra023606.1-P Field mustard plastid 29.8 28.88
Bra026756.1-P Field mustard plastid 28.82 28.61
Bra016654.1-P Field mustard nucleus, plastid 30.54 27.87
Bra032202.1-P Field mustard plastid 28.82 27.73
Bra026065.1-P Field mustard nucleus 34.48 27.67
Bra003563.1-P Field mustard plastid 29.31 27.55
Bra008973.1-P Field mustard nucleus, plastid 29.06 27.0
Bra008477.1-P Field mustard plastid 29.06 25.82
Bra026120.1-P Field mustard nucleus 29.31 25.54
Bra035186.1-P Field mustard plastid 28.57 25.11
Bra016640.1-P Field mustard nucleus 35.71 22.14
Bra036544.1-P Field mustard nucleus 28.08 11.55
Protein Annotations
Gene3D:1.10.472.10MapMan:13.1.1.1.2EnsemblPlantsGene:Bra017726EnsemblPlants:Bra017726.1EnsemblPlants:Bra017726.1-PInterPro:Cyclin-like
InterPro:Cyclin-like_sfInterPro:Cyclin_C-domInterPro:Cyclin_NGO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005634UniProt:M4DMJ1PFAM:PF00134PFAM:PF02984PIRSF:PIRSF001771ScanProsite:PS00292
PANTHER:PTHR10177PANTHER:PTHR10177:SF336SMART:SM00385SMART:SM01332SUPFAM:SSF47954UniParc:UPI0002540BC3
SEG:seg:::::
Description
AT4G35620 (E=8e-144) CYCB2;2 | CYCB2;2 (Cyclin B2;2); cyclin-dependent protein kinase regulator
Coordinates
chrA03:+:30029433..30031433
Molecular Weight (calculated)
46853.1 Da
IEP (calculated)
4.599
GRAVY (calculated)
-0.356
Length
406 amino acids
Sequence
(BLAST)
001: MVNQEPITAI LQDETRRSTK LGLEMKRQNR RALSVINQNL VVAKAYPCVV NKRRGLSESQ EETKKLKPSV PSGNEFGDCI FIDDEDEEEE EAATLDQSMP
101: MSLEEPYIES DPMEEEVEME EEEQEPVLDI DVDDAHNPLA VIEYVQDLHE FYRKNERFSC VPQDYMAQQY DITEKMRAIL IDWLIEVHDK FELMNETLYL
201: TVNLIDRFLS KQAVVRKKLQ LVGLVALLLA CKYEEVSVPI VEDLVVISDK AYTRNDVLEM EKIMLNTLQF NMSLPTQYPF LKRFLKAAQS DKKLEMLASF
301: LMELALVDYE MLRYPPSLLA ASAVYTAKCT IHGFSEWNST CEFHSHYSED QLRECSRRMV SLHQKAATDK LTGVRRKYSS SKFGYIATKY EAAAAHFLLV
401: SDSPKL
Best Arabidopsis Sequence Match ( AT4G35620.1 )
(BLAST)
001: MVNPEENNRN LVVKPITEIL QDDDKRSRKF GVEMKRQNRR ALGVINHNLV GAKAYPCVVN KRRGLSQRKQ ESCDKKKLDS LHPSISRSQE ETKKLKPSGN
101: EFGDCIFIDE EEEKNEEVTL DQPMPMSLEE PYIEFDPMEE EVEMEDMEEE QEEPVLDIDE YDANNSLAAV EYVQDLYDFY RKTERFSCVP LDYMAQQFDI
201: SDKMRAILID WLIEVHDKFE LMNETLFLTV NLIDRFLSKQ AVARKKLQLV GLVALLLACK YEEVSVPIVE DLVVISDKAY TRTDVLEMEK IMLSTLQFNM
301: SLPTQYPFLK RFLKAAQSDK KLEILASFLI ELALVDYEMV RYPPSLLAAT AVYTAQCTIH GFSEWNSTCE FHCHYSENQL LECCRRMVRL HQKAGTDKLT
401: GVHRKYSSSK FGYIATKYEA AHFLVSDSH
Arabidopsis Description
CYCB2-2Cyclin-B2-2 [Source:UniProtKB/Swiss-Prot;Acc:Q39070]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.