Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 1
- nucleus 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY31481 | Canola | nucleus | 44.6 | 57.14 |
| PGSC0003DMT400075380 | Potato | nucleus | 46.76 | 54.85 |
| HORVU7Hr1G121820.6 | Barley | nucleus | 77.7 | 51.43 |
| TraesCS7D01G536000.1 | Wheat | nucleus | 74.1 | 49.16 |
| TraesCS7A01G549500.1 | Wheat | nucleus | 73.74 | 48.93 |
| TraesCS7B01G472800.1 | Wheat | nucleus | 73.02 | 48.45 |
| Os06t0726800-01 | Rice | nucleus | 67.27 | 44.63 |
| KXG20945 | Sorghum | nucleus | 66.55 | 43.63 |
| AT1G20590.1 | Thale cress | cytosol, golgi, nucleus, plastid | 41.01 | 43.02 |
| Zm00001d036360_P002 | Maize | nucleus | 65.11 | 42.69 |
| GSMUA_Achr5P19270_001 | Banana | cytosol | 32.73 | 41.94 |
| GSMUA_Achr11P... | Banana | nucleus | 58.99 | 40.2 |
| Solyc04g082430.2.1 | Tomato | nucleus | 53.6 | 37.91 |
| GSMUA_Achr8P13320_001 | Banana | nucleus | 57.19 | 37.86 |
| GSMUA_Achr5P19110_001 | Banana | nucleus | 57.19 | 37.5 |
| Bra003727.1-P | Field mustard | nucleus | 49.64 | 36.03 |
| PGSC0003DMT400093973 | Potato | nucleus | 42.09 | 35.45 |
| VIT_03s0038g02800.t01 | Wine grape | nucleus, plastid | 53.96 | 35.38 |
| KRH60628 | Soybean | nucleus | 51.44 | 35.31 |
| KRH51329 | Soybean | nucleus, plastid | 52.52 | 35.18 |
| CDX85942 | Canola | nucleus | 50.0 | 34.07 |
| VIT_18s0001g14170.t01 | Wine grape | nucleus | 53.96 | 34.01 |
| PGSC0003DMT400025854 | Potato | nucleus | 53.96 | 34.01 |
| KRH28901 | Soybean | nucleus | 52.88 | 33.95 |
| Bra025831.1-P | Field mustard | nucleus | 50.0 | 33.9 |
| CDX72551 | Canola | nucleus | 48.56 | 33.67 |
| CDY29520 | Canola | nucleus | 49.64 | 33.66 |
| KRH76553 | Soybean | nucleus | 52.16 | 33.56 |
| CDY26816 | Canola | nucleus | 48.92 | 33.42 |
| CDY29184 | Canola | nucleus | 50.36 | 33.41 |
| Bra024504.1-P | Field mustard | nucleus | 50.36 | 33.41 |
| PGSC0003DMT400048062 | Potato | nucleus | 51.8 | 33.41 |
| CDY33634 | Canola | nucleus | 48.92 | 33.33 |
| CDY30357 | Canola | nucleus | 48.92 | 33.25 |
| CDY67210 | Canola | nucleus | 48.56 | 33.25 |
| CDY07838 | Canola | nucleus | 49.64 | 33.01 |
| Bra037265.1-P | Field mustard | nucleus | 48.56 | 33.01 |
| Bra017726.1-P | Field mustard | nucleus | 48.2 | 33.0 |
| Solyc03g032190.2.1 | Tomato | nucleus | 51.08 | 32.95 |
| CDX96631 | Canola | nucleus | 48.56 | 32.93 |
| Bra016460.1-P | Field mustard | nucleus | 48.56 | 32.93 |
| Solyc12g094600.1.1 | Tomato | nucleus | 50.0 | 32.71 |
| Solyc02g082820.2.1 | Tomato | nucleus | 50.72 | 32.49 |
| AT2G17620.1 | Thale cress | nucleus | 50.0 | 32.4 |
| PGSC0003DMT400003868 | Potato | nucleus | 50.36 | 32.33 |
| HORVU2Hr1G096070.2 | Barley | nucleus | 54.68 | 32.27 |
| AT4G35620.1 | Thale cress | nucleus | 49.28 | 31.93 |
| CDX68105 | Canola | nucleus | 44.96 | 31.65 |
| Bra015762.1-P | Field mustard | nucleus | 48.92 | 31.55 |
| AT1G20610.1 | Thale cress | nucleus | 48.56 | 31.47 |
| CDX88261 | Canola | nucleus | 48.56 | 31.4 |
| CDX87612 | Canola | nucleus | 48.56 | 31.32 |
| AT1G76310.3 | Thale cress | nucleus | 50.72 | 30.72 |
| Solyc02g061650.1.1 | Tomato | nucleus | 38.13 | 30.2 |
| HORVU0Hr1G001680.1 | Barley | nucleus | 31.65 | 27.5 |
| HORVU1Hr1G068080.1 | Barley | plastid | 32.73 | 26.61 |
| GSMUA_Achr11P... | Banana | endoplasmic reticulum, vacuole | 56.83 | 23.65 |
| HORVU1Hr1G068010.7 | Barley | mitochondrion, nucleus | 35.25 | 23.33 |
| HORVU0Hr1G001690.16 | Barley | nucleus, peroxisome | 34.89 | 22.15 |
| HORVU3Hr1G078880.2 | Barley | nucleus | 35.97 | 22.08 |
| HORVU4Hr1G013320.1 | Barley | nucleus | 28.42 | 21.18 |
| HORVU1Hr1G068160.2 | Barley | nucleus, plastid | 33.45 | 20.99 |
| HORVU0Hr1G026010.1 | Barley | nucleus, plastid | 33.45 | 20.99 |
| HORVU3Hr1G040990.2 | Barley | nucleus, plastid | 33.45 | 18.9 |
| HORVU5Hr1G018820.2 | Barley | nucleus, plastid | 28.42 | 17.4 |
| HORVU4Hr1G069310.3 | Barley | nucleus | 25.9 | 17.35 |
| HORVU3Hr1G114440.21 | Barley | nucleus, plastid | 29.5 | 16.17 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:35.1 | UniProt:A0A287E806 | ncoils:Coil | InterPro:Cyclin-like | InterPro:Cyclin-like_sf |
| InterPro:Cyclin_C-dom | InterPro:Cyclin_N | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| EnsemblPlantsGene:HORVU0Hr1G022770 | EnsemblPlants:HORVU0Hr1G022770.1 | PFAM:PF00134 | PFAM:PF02984 | PIRSF:PIRSF001771 | PANTHER:PTHR10177 |
| PANTHER:PTHR10177:SF338 | SMART:SM00385 | SMART:SM01332 | SUPFAM:SSF47954 | UniParc:UPI000B48678D | SEG:seg |
Description
No Description!
Coordinates
chrchrUn:+:115108096..115109322
Molecular Weight (calculated)
27665.7 Da
IEP (calculated)
8.139
GRAVY (calculated)
-0.096
Length
278 amino acids
Sequence
(BLAST)
(BLAST)
001: TTRSGHSIVL PTMPNLNSNS SFEARDFAAR PRRDDSRGEX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXETLFLTV NIIDRYLARE NVARKKLQLV
101: GVTAMLLACK YEEVSVPVVE DLILICDRAY TREDILEMER MVVDRLEFNM SVPTPYCFMR RFLKAAGSDK KLELLSFFLI ELSLVDYKML KFQPSMLAAA
201: AIYTAQCTLH GCMSWNKCCE LHTKYSEQQL KECSTMMVEL HQGAAGGKLT GVHRKYSTFR YGCAAKSEPA AFLLDARA
101: GVTAMLLACK YEEVSVPVVE DLILICDRAY TREDILEMER MVVDRLEFNM SVPTPYCFMR RFLKAAGSDK KLELLSFFLI ELSLVDYKML KFQPSMLAAA
201: AIYTAQCTLH GCMSWNKCCE LHTKYSEQQL KECSTMMVEL HQGAAGGKLT GVHRKYSTFR YGCAAKSEPA AFLLDARA
001: MVRSDENSLG LIGSMSLQGG GVVGKIKTTA TTGPTRRALS TINKNITEAP SYPYAVNKRS VSERDGICNK PPVHRPVTRK FAAQLADHKP HIRDEETKKP
101: DSVSSEEPET IIIDVDESDK EGGDSNEPMF VQHTEAMLEE IEQMEKEIEM EDADKEEEPV IDIDACDKNN PLAAVEYIHD MHTFYKNFEK LSCVPPNYMD
201: NQQDLNERMR GILIDWLIEV HYKFELMEET LYLTINVIDR FLAVHQIVRK KLQLVGVTAL LLACKYEEVS VPVVDDLILI SDKAYSRREV LDMEKLMANT
301: LQFNFSLPTP YVFMKRFLKA AQSDKKLEIL SFFMIELCLV EYEMLEYLPS KLAASAIYTA QCTLKGFEEW SKTCEFHTGY NEKQLLACAR KMVAFHHKAG
401: TGKLTGVHRK YNTSKFCHAA RTEPAGFLI
101: DSVSSEEPET IIIDVDESDK EGGDSNEPMF VQHTEAMLEE IEQMEKEIEM EDADKEEEPV IDIDACDKNN PLAAVEYIHD MHTFYKNFEK LSCVPPNYMD
201: NQQDLNERMR GILIDWLIEV HYKFELMEET LYLTINVIDR FLAVHQIVRK KLQLVGVTAL LLACKYEEVS VPVVDDLILI SDKAYSRREV LDMEKLMANT
301: LQFNFSLPTP YVFMKRFLKA AQSDKKLEIL SFFMIELCLV EYEMLEYLPS KLAASAIYTA QCTLKGFEEW SKTCEFHTGY NEKQLLACAR KMVAFHHKAG
401: TGKLTGVHRK YNTSKFCHAA RTEPAGFLI
Arabidopsis Description
CYCB2-3Cyclin-B2-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LDM4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.