Factsheet for PGSC0003DMT400025854

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400001218
PGSC0003DMT400002100
PGSC0003DMT400013736
PGSC0003DMT400017831
PGSC0003DMT400021687
PGSC0003DMT400037076
PGSC0003DMT400037077
PGSC0003DMT400038307
PGSC0003DMT400039096
PGSC0003DMT400042160
PGSC0003DMT400045314
PGSC0003DMT400048460
PGSC0003DMT400051207
PGSC0003DMT400074878
PGSC0003DMT400084196

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G20590.1	PGSC0003DMT400051207	AT4G19210.1	20706207
AT1G20590.1	PGSC0003DMT400037076	AT4G25550.1	20706207
AT1G20590.1	PGSC0003DMT400037077	AT4G25550.1	20706207
AT1G20590.1	PGSC0003DMT400084196	AT4G25550.1	20706207
AT1G20610.1	PGSC0003DMT400013736	AT1G19520.1	20706207
AT1G20610.1	PGSC0003DMT400038307	AT1G19520.1	20706207
AT1G20610.1	PGSC0003DMT400002100	AT1G43700.1	20706207
AT1G20610.1	PGSC0003DMT400045314	AT1G43700.1	20706207
AT1G20610.1	PGSC0003DMT400074878	AT1G43700.1	20706207
AT1G20610.1	PGSC0003DMT400039096	AT1G56290.1	20706207
AT1G20610.1	PGSC0003DMT400021687	AT1G71380.1	20706207
AT1G20610.1	PGSC0003DMT400001218	AT2G27960.1	20706207
AT1G20610.1	PGSC0003DMT400048460	AT2G27960.1	20706207
AT1G20610.1	PGSC0003DMT400042160	AT3G11270.1	20706207
AT1G20610.1	PGSC0003DMT400017831	AT5G14170.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g082430.2.1	Tomato	nucleus	86.39	96.95
PGSC0003DMT400075380	Potato	nucleus	42.63	79.32
CDY31481	Canola	nucleus	34.69	70.51
VIT_18s0001g14170.t01	Wine grape	nucleus	68.71	68.71
CDX85942	Canola	nucleus	61.22	66.18
Bra015762.1-P	Field mustard	nucleus	64.17	65.66
CDX87612	Canola	nucleus	63.95	65.43
CDX88261	Canola	nucleus	63.49	65.12
Bra003727.1-P	Field mustard	nucleus	56.24	64.75
Bra016460.1-P	Field mustard	nucleus	59.86	64.39
CDY33634	Canola	nucleus	59.41	64.22
CDX96631	Canola	nucleus	59.41	63.9
CDX68105	Canola	nucleus	56.92	63.54
AT1G20610.1	Thale cress	nucleus	61.0	62.7
AT1G76310.3	Thale cress	nucleus	64.63	62.09
GSMUA_Achr5P19270_001	Banana	cytosol	29.93	60.83
PGSC0003DMT400048062	Potato	nucleus	59.18	60.56
KRH60628	Soybean	nucleus	55.56	60.49
Os06t0726800-01	Rice	nucleus	57.37	60.38
KRH51329	Soybean	nucleus, plastid	56.46	60.0
CDY29520	Canola	nucleus	55.56	59.76
Bra025831.1-P	Field mustard	nucleus	55.56	59.76
GSMUA_Achr8P13320_001	Banana	nucleus	56.46	59.29
KXG20945	Sorghum	nucleus	56.92	59.2
Zm00001d036360_P002	Maize	nucleus	56.69	58.96
TraesCS7A01G549500.1	Wheat	nucleus	55.78	58.71
HORVU7Hr1G121820.6	Barley	nucleus	55.33	58.1
GSMUA_Achr11P...	Banana	nucleus	53.51	57.84
TraesCS7D01G536000.1	Wheat	nucleus	54.88	57.76
PGSC0003DMT400003868	Potato	nucleus	56.69	57.74
TraesCS7B01G472800.1	Wheat	nucleus	54.65	57.52
GSMUA_Achr5P19110_001	Banana	nucleus	52.83	54.95
TraesCS2A01G404800.1	Wheat	nucleus	50.11	54.57
PGSC0003DMT400093973	Potato	nucleus	40.82	54.55
TraesCS2B01G422800.1	Wheat	nucleus	50.57	54.52
HORVU0Hr1G022770.1	Barley	nucleus, plastid	34.01	53.96
TraesCS2D01G401700.1	Wheat	nucleus, plastid	51.02	53.44
Os04t0563700-01	Rice	mitochondrion	50.34	52.86
Zm00001d026129_P001	Maize	nucleus	50.11	51.88
AT1G20590.1	Thale cress	cytosol, golgi, nucleus, plastid	31.07	51.7
EES12664	Sorghum	nucleus	49.89	50.93
Zm00001d002662_P010	Maize	nucleus	50.11	48.57
HORVU2Hr1G096070.2	Barley	nucleus	50.11	46.92
GSMUA_Achr11P...	Banana	endoplasmic reticulum, vacuole	54.88	36.23
PGSC0003DMT400058457	Potato	nucleus	34.01	35.89
PGSC0003DMT400018480	Potato	nucleus	34.01	35.29
PGSC0003DMT400072211	Potato	nucleus	36.96	35.13
PGSC0003DMT400015245	Potato	nucleus	33.79	33.94
PGSC0003DMT400055428	Potato	nucleus	26.08	31.25
PGSC0003DMT400030222	Potato	nucleus	24.94	31.07
PGSC0003DMT400030176	Potato	nucleus	24.94	30.9
PGSC0003DMT400056625	Potato	nucleus	23.36	27.11
PGSC0003DMT400006576	Potato	nucleus	27.44	26.13
PGSC0003DMT400015424	Potato	plastid	27.66	25.85
PGSC0003DMT400067117	Potato	plastid	28.12	24.95

Protein Annotations

Gene3D:1.10.472.10	EntrezGene:102597602	MapMan:13.1.1.1.2	ncoils:Coil	InterPro:Cyclin-like	InterPro:Cyclin-like_sf
InterPro:Cyclin_C-dom	InterPro:Cyclin_N	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
UniProt:M1AM76	PFAM:PF00134	PFAM:PF02984	EnsemblPlantsGene:PGSC0003DMG400009983	PGSC:PGSC0003DMG400009983	EnsemblPlants:PGSC0003DMT400025854
PIRSF:PIRSF001771	ScanProsite:PS00292	PANTHER:PTHR10177	PANTHER:PTHR10177:SF350	SMART:SM00385	SMART:SM01332
SUPFAM:SSF47954	UniParc:UPI000294999F	RefSeq:XP_006342132.1	SEG:seg	:	:

Description

Cyclin B [Source:PGSC_GENE;Acc:PGSC0003DMG400009983]

Coordinates

chr4:-:71605689..71608754

Molecular Weight (calculated)

49870.6 Da

IEP (calculated)

6.258

GRAVY (calculated)

-0.140

Length

441 amino acids

Sequence
(BLAST)

001: MAGSDENYPG VIRPSNLQGG LRPGVGGKVN GGLGQNRRAL STINRNVMGA PPLHCAVVHK RNDITENKSN AATNKIPPVP IHRPITRKLA AQIASKQHQP
101: AIEVTKPPVP VVPIRNESAD CIIIDAEDYK TTGNSAVPMF VQHTEAMMEE IDRMDEEIEM EDAEDWSIVD IDSPDKKNSL AVVEYIDDIY SYYKKAEIVS
201: CVPPNYMEQQ FDINERMRGI LIDWLIEVHY KFELLEETLY LTVNLIDRFL AVQSVIRKKL QLVGITAMLL ACKYEEVSVP VVEDLILISD RAYTRKEVLE
301: MEKLMVNALQ FNMTVPTAYA FMRRFLKAAQ SDKKVELVSF FLIELCLVEY EMLRFPPSML AAAAIFTAQC TLGVSKEWNK TCEKHSSYVK DQLLECSKLM
401: VCFHQKAAIG KLTGVHRKYS TSKYGYATRC EPASFLLEAW F

Best Arabidopsis Sequence Match ( AT1G76310.1 )
(BLAST)

001: MGGSDENRHG VIGPMNRQQG GLRGGKVIPT NGQTRRALSN INKNIIGAPV YPCAVKRPFT EKNGICNKKI PPVPVHRPVT RKFAAQLAEN NLQIHKEETK
101: KPDLISNEAL DRIITDVEEG DFNEPMFVQH TEAMLEEIDK MEGIEMQDSN DIDAEVEESV MDIDSCDKNN PLSVVEYIND IYCFYKKNEC RSCVPPNYME
201: NQHDINERMR GILFDWLIEV HYKFELMEET LYLTINLIDR FLAVHQHIAR KKLQLVGVTA MLLACKYEEV SVPVVDDLIL ISDKAYTRTE ILDMEKLMAN
301: TLQFNFCLPT PYVFMRRFLK AAQSDKKLEL LSFFMIELCL VEYEMLQYTP SQLAASAIYT AQSTLKGYED WSKTSEFHSG YTEEALLECS RKMVGLHHKA
401: GTGKLTGVHR KYNTSKFGYA ARIEPAGFLL L

Arabidopsis Description

CYCB2;4CYCLIN B2;4 [Source:TAIR;Acc:AT1G76310]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.