Factsheet for PGSC0003DMT400015424

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
nucleus 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400017831

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G44110.1	PGSC0003DMT400017831	AT5G14170.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g005090.1.1	Tomato	plastid	94.07	90.61
VIT_18s0001g02080.t01	Wine grape	nucleus, plastid	51.06	65.14
KRH53279	Soybean	plastid	65.25	64.17
VIT_18s0001g02060.t01	Wine grape	plastid	66.74	63.64
KRH64625	Soybean	plastid	65.04	63.43
Os05t0237100-01	Rice	extracellular	25.21	60.41
AT1G44110.1	Thale cress	plastid	55.51	56.96
Bra032202.1-P	Field mustard	plastid	50.21	56.16
Bra023606.1-P	Field mustard	plastid	49.58	55.85
Zm00001d032128_P001	Maize	cytosol	18.43	55.06
CDX85466	Canola	plastid	49.15	54.98
KRH17986	Soybean	plastid	58.47	54.87
CDY02719	Canola	plastid	49.79	54.78
CDY65994	Canola	plastid	51.27	54.63
CDY25649	Canola	plastid	50.21	54.23
KRH16410	Soybean	plastid	57.63	53.97
Os12t0298950-00	Rice	nucleus	50.85	53.69
CDX88368	Canola	plastid	43.01	53.42
GSMUA_Achr5P06960_001	Banana	nucleus, plastid	56.36	53.2
GSMUA_Achr2P19220_001	Banana	nucleus, plastid	56.14	52.79
TraesCS1B01G151800.3	Wheat	nucleus	39.41	52.39
CDX87520	Canola	nucleus	42.8	52.33
Os01t0233500-01	Rice	nucleus, plastid	56.14	52.17
Os01t0233100-00	Rice	nucleus, plastid	54.24	52.14
Bra015671.1-P	Field mustard	plastid	42.58	52.07
CDY62408	Canola	nucleus, plasma membrane, plastid	23.09	51.66
CDY41784	Canola	plastid	36.65	50.88
TraesCS3A01G157000.1	Wheat	plastid	54.66	50.29
TraesCS3D01G164600.1	Wheat	plastid	54.03	50.0
TraesCS3B01G183400.1	Wheat	plastid	53.81	49.8
Zm00001d040381_P001	Maize	plastid	55.93	49.53
AT1G77390.1	Thale cress	plastid	44.49	47.51
CDX92090	Canola	mitochondrion, nucleus	35.38	46.78
Bra022173.1-P	Field mustard	nucleus, plastid	36.23	45.36
Zm00001d009011_P001	Maize	nucleus, plastid	48.09	44.51
TraesCS1D01G134100.2	Wheat	nucleus, plastid	44.49	44.03
Zm00001d021353_P002	Maize	mitochondrion, nucleus	18.64	44.0
PGSC0003DMT400030222	Potato	nucleus	32.42	43.22
KXG21616	Sorghum	nucleus, plastid	43.64	43.01
PGSC0003DMT400030176	Potato	nucleus	32.2	42.7
PGSC0003DMT400055428	Potato	nucleus	33.26	42.66
TraesCS1A01G138300.1	Wheat	nucleus, plastid	44.28	39.81
PGSC0003DMT400075380	Potato	nucleus	19.07	37.97
PGSC0003DMT400056625	Potato	nucleus	30.51	37.89
Zm00001d010404_P001	Maize	nucleus	37.08	36.08
PGSC0003DMT400067117	Potato	plastid	37.5	35.61
PGSC0003DMT400006576	Potato	nucleus	33.9	34.56
PGSC0003DMT400093973	Potato	nucleus	20.76	29.7
PGSC0003DMT400018480	Potato	nucleus	25.21	28.0
PGSC0003DMT400025854	Potato	nucleus	25.85	27.66
PGSC0003DMT400003868	Potato	nucleus	25.21	27.48
PGSC0003DMT400058457	Potato	nucleus	24.15	27.27
PGSC0003DMT400048062	Potato	nucleus	24.36	26.68
PGSC0003DMT400015245	Potato	nucleus	24.79	26.65
PGSC0003DMT400072211	Potato	nucleus	25.85	26.29

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.1	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_C-dom	InterPro:Cyclin_N
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	UniProt:M1A606	PFAM:PF00134
PFAM:PF02984	EnsemblPlantsGene:PGSC0003DMG400006020	PGSC:PGSC0003DMG400006020	EnsemblPlants:PGSC0003DMT400015424	PIRSF:PIRSF001771	ScanProsite:PS00292
PANTHER:PTHR10177	PANTHER:PTHR10177:SF239	SMART:SM00385	SMART:SM01332	SUPFAM:SSF47954	UniParc:UPI000295C52F
SEG:seg	:	:	:	:	:

Description

Cyclin A1 [Source:PGSC_GENE;Acc:PGSC0003DMG400006020]

Coordinates

chr11:-:8479951..8483261

Molecular Weight (calculated)

52077.5 Da

IEP (calculated)

7.202

GRAVY (calculated)

-0.122

Length

472 amino acids

Sequence
(BLAST)

001: MMTTQNRRSS VSSAVAKRQA MAANSSGLEN NQTGKLNAGA AKKRPALSNI SNHTTVSARN SISHSSKLAP CTSKIVSIKK NISSGTAVLP ASSSVRPSSK
101: PVSIQRSDAV VPKITAIPLP ATCSMDISPS HSDGSLVSMD ESMSTSDTVR SPEVEYIDDL ESAAVDSIEK KACSTLYISE HIKAAAADIC KRDVLVDLES
201: GDKIVNIDNN LVDPQLCATM ACDIYTHLRA SEAKKRPSTD FMAKVQKDIN PSMRAILIDW LVEVAEEYRL VPDTLHLTIN YIDRYLSGNL MDRQRLQLLG
301: VACMMIASKY EEICAPQVEE FCYITDNTYF KEEVLQMEST VLNYLKFEMT APTAKCFLRR FVRAAQGLNE VLSLQLEHLA SYIAELSLLE YNMLSYAPSL
401: IAASAIFLAK YILLPSVKPW NSTLRHYTLY QPSDLQDCVM ALHSLCCNNN NSSLPAVREK YSQHKVIYPS PF

Best Arabidopsis Sequence Match ( AT1G44110.1 )
(BLAST)

001: MSNILQNRRS SFSSSTKSSL AKRQAPSSSE NSVKLMPAMT KKRAPLSNIT NQKIASRLQN SDSVHCSNKS AKLKIAPSVC VNASFSSNLQ QSIVPHKVAS
101: SPSKSDDGSV SMDETRSSSD SYKSPQVEYI ENDDVSAVVS IERKALSNLF ITPNSETIDN YCSRDVLSDM KKMDKNQIVN IDSNNGDPQL CATFACDIYK
201: HLRASEAKKR PDVDYMERVQ KDVNSSMRGI LVDWLIEVSE EYRLVPETLY LTVNYIDRYL SGNVISRQKL QLLGVACMMI AAKYEEICAP QVEEFCYITD
301: NTYLKDEVLD MESDVLNYLK FEMTAPTTKC FLRRFVRAAH GVHEAPLMQL ECMANYIAEL SLLEYTMLSH SPSLVAASAI FLAKYILDPT RRPWNSTLQH
401: YTQYKAMELR GCVKDLQRLC STAHGSTLPA VREKYSQHKY KFVAKKFCPS VIPQEFFNNS

Arabidopsis Description

CYCA1-1CYCA1 [Source:UniProtKB/TrEMBL;Acc:A0A178W0H5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.